miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30935 5' -51.6 NC_006552.1 + 63200 0.67 0.866979
Target:  5'- aGGCGuuguccugGCCGCAACgGUgaacccucgcgGCAcgUGCGCc -3'
miRNA:   3'- aCCGU--------UGGUGUUGgUA-----------CGUuaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 57524 0.67 0.862007
Target:  5'- cGGCAaaaaaccacaguucuGCCGCAauuGCCAUGCAcacCGC-Ca -3'
miRNA:   3'- aCCGU---------------UGGUGU---UGGUACGUua-GCGcG- -5'
30935 5' -51.6 NC_006552.1 + 2487 0.67 0.858642
Target:  5'- cGGCAugCACGAguUCGU-CGA-CGCGCu -3'
miRNA:   3'- aCCGUugGUGUU--GGUAcGUUaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 64163 0.67 0.858642
Target:  5'- cUGGCGcACgCGcCGACCAguucgGCAuccccGUCGUGCa -3'
miRNA:   3'- -ACCGU-UG-GU-GUUGGUa----CGU-----UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 12923 0.67 0.850057
Target:  5'- gUGGUGuucGCCACaAGCUcgGCcagCGCGCu -3'
miRNA:   3'- -ACCGU---UGGUG-UUGGuaCGuuaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 53975 0.67 0.850057
Target:  5'- cGGCaAGCCugAGCag-GCAGgccaggCGCGUg -3'
miRNA:   3'- aCCG-UUGGugUUGguaCGUUa-----GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 26273 0.68 0.841233
Target:  5'- cGGCAggaugaccgugGCCGCGcCCAgcggGUAGUCGCcgGCc -3'
miRNA:   3'- aCCGU-----------UGGUGUuGGUa---CGUUAGCG--CG- -5'
30935 5' -51.6 NC_006552.1 + 40413 0.68 0.841233
Target:  5'- cGGCAuguCCAgGAUCAgcaccuugguaaUGCcGUUGCGCu -3'
miRNA:   3'- aCCGUu--GGUgUUGGU------------ACGuUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 56858 0.68 0.841233
Target:  5'- cGGCAgcGCCGCGGCgAgcgGCGAaCGCa- -3'
miRNA:   3'- aCCGU--UGGUGUUGgUa--CGUUaGCGcg -5'
30935 5' -51.6 NC_006552.1 + 9308 0.68 0.841233
Target:  5'- cGGCGuCCACcACCcUGCuGUCGC-Cg -3'
miRNA:   3'- aCCGUuGGUGuUGGuACGuUAGCGcG- -5'
30935 5' -51.6 NC_006552.1 + 56444 0.68 0.841233
Target:  5'- gGGCGAUU-CAACCAUGCc-UCGUGg -3'
miRNA:   3'- aCCGUUGGuGUUGGUACGuuAGCGCg -5'
30935 5' -51.6 NC_006552.1 + 5065 0.68 0.832179
Target:  5'- cUGGCcACCAggcCAGCCA-GCGcuAUCGCaGCc -3'
miRNA:   3'- -ACCGuUGGU---GUUGGUaCGU--UAGCG-CG- -5'
30935 5' -51.6 NC_006552.1 + 29274 0.68 0.832179
Target:  5'- gGGUguacAGCCA-AACCGUGgGAuUCGCGCc -3'
miRNA:   3'- aCCG----UUGGUgUUGGUACgUU-AGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 50269 0.68 0.832179
Target:  5'- gGGCcuCCGCAugaaGCCAaaUGCGAcUgGCGCc -3'
miRNA:   3'- aCCGuuGGUGU----UGGU--ACGUU-AgCGCG- -5'
30935 5' -51.6 NC_006552.1 + 25642 0.68 0.832179
Target:  5'- cGGCGGCCAUuuCUuUGCGcagaGCGCu -3'
miRNA:   3'- aCCGUUGGUGuuGGuACGUuag-CGCG- -5'
30935 5' -51.6 NC_006552.1 + 64116 0.68 0.831261
Target:  5'- cGGaCGACCGCaAGCUGUGCcuGAuucgcaacgcagcUCGCGCc -3'
miRNA:   3'- aCC-GUUGGUG-UUGGUACG--UU-------------AGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 58632 0.68 0.822905
Target:  5'- gGGCAgacugaACCGCGACCggGCGA-CGaGCc -3'
miRNA:   3'- aCCGU------UGGUGUUGGuaCGUUaGCgCG- -5'
30935 5' -51.6 NC_006552.1 + 52950 0.68 0.822905
Target:  5'- cGGCGcCCGCcGCCGgugcgGCAuccgggUGCGCg -3'
miRNA:   3'- aCCGUuGGUGuUGGUa----CGUua----GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 14094 0.68 0.822905
Target:  5'- cGGcCGGCCG-GGCCGcGCuucauGUCGCGCg -3'
miRNA:   3'- aCC-GUUGGUgUUGGUaCGu----UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 37798 0.68 0.813421
Target:  5'- cGGCGAUCggcGCGAUCAUugGCAucUGCGCg -3'
miRNA:   3'- aCCGUUGG---UGUUGGUA--CGUuaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.