Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30935 | 5' | -51.6 | NC_006552.1 | + | 21150 | 0.66 | 0.89043 |
Target: 5'- gGGCGGCgGCGAC---GCGAUagGCGCa -3' miRNA: 3'- aCCGUUGgUGUUGguaCGUUAg-CGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 13720 | 0.66 | 0.897706 |
Target: 5'- uUGGCcuucugccaGGCCACGAauGUGuCGAUgGCGCg -3' miRNA: 3'- -ACCG---------UUGGUGUUggUAC-GUUAgCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 20381 | 0.66 | 0.904702 |
Target: 5'- gGGCGACCucgaACAggcgcugcGCCAUGUucUgGUGCa -3' miRNA: 3'- aCCGUUGG----UGU--------UGGUACGuuAgCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 26859 | 0.66 | 0.917841 |
Target: 5'- gGGCucucGCCGCcGCguUGCAG-CGCGg -3' miRNA: 3'- aCCGu---UGGUGuUGguACGUUaGCGCg -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 20486 | 0.66 | 0.917841 |
Target: 5'- aGGUGGCCGCuugcACCAggauGUCGCGg -3' miRNA: 3'- aCCGUUGGUGu---UGGUacguUAGCGCg -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 55681 | 0.66 | 0.89043 |
Target: 5'- cGGCuGCCAgGaaggggucgaucGCCggGCGAgaCGCGCa -3' miRNA: 3'- aCCGuUGGUgU------------UGGuaCGUUa-GCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 31285 | 0.66 | 0.911415 |
Target: 5'- cGGUAGCCGuguCGAUgaAUGCAAUCaGCGg -3' miRNA: 3'- aCCGUUGGU---GUUGg-UACGUUAG-CGCg -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 38244 | 0.66 | 0.89043 |
Target: 5'- aGGCGGCgC-CggUC-UGCGgAUCGCGCu -3' miRNA: 3'- aCCGUUG-GuGuuGGuACGU-UAGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 24425 | 0.67 | 0.875061 |
Target: 5'- gGGCAGaCgCACGuuuCCAaGCugcUCGCGCa -3' miRNA: 3'- aCCGUU-G-GUGUu--GGUaCGuu-AGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 2158 | 0.67 | 0.875061 |
Target: 5'- cUGGCcACCAUAACCccucucccGCGAUagcccauacCGCGCc -3' miRNA: 3'- -ACCGuUGGUGUUGGua------CGUUA---------GCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 13495 | 0.67 | 0.872664 |
Target: 5'- gGGUAGCCAuccuugccgaaguuCAcCCcgGCAAggUGCGCg -3' miRNA: 3'- aCCGUUGGU--------------GUuGGuaCGUUa-GCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 53975 | 0.67 | 0.850057 |
Target: 5'- cGGCaAGCCugAGCag-GCAGgccaggCGCGUg -3' miRNA: 3'- aCCG-UUGGugUUGguaCGUUa-----GCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 13894 | 0.67 | 0.88288 |
Target: 5'- gUGGCuugcuCCACGGCCGccUGCugagcAUCgGUGCg -3' miRNA: 3'- -ACCGuu---GGUGUUGGU--ACGu----UAG-CGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 49186 | 0.67 | 0.877435 |
Target: 5'- cGGCGGCCugguccggcuggucaGCAACCggGUgaucuacGGUCGCGa -3' miRNA: 3'- aCCGUUGG---------------UGUUGGuaCG-------UUAGCGCg -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 56262 | 0.67 | 0.875061 |
Target: 5'- cUGGCAGCCAaGGCCG-GC-GUC-CGCc -3' miRNA: 3'- -ACCGUUGGUgUUGGUaCGuUAGcGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 63200 | 0.67 | 0.866979 |
Target: 5'- aGGCGuuguccugGCCGCAACgGUgaacccucgcgGCAcgUGCGCc -3' miRNA: 3'- aCCGU--------UGGUGUUGgUA-----------CGUuaGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 57524 | 0.67 | 0.862007 |
Target: 5'- cGGCAaaaaaccacaguucuGCCGCAauuGCCAUGCAcacCGC-Ca -3' miRNA: 3'- aCCGU---------------UGGUGU---UGGUACGUua-GCGcG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 64163 | 0.67 | 0.858642 |
Target: 5'- cUGGCGcACgCGcCGACCAguucgGCAuccccGUCGUGCa -3' miRNA: 3'- -ACCGU-UG-GU-GUUGGUa----CGU-----UAGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 2487 | 0.67 | 0.858642 |
Target: 5'- cGGCAugCACGAguUCGU-CGA-CGCGCu -3' miRNA: 3'- aCCGUugGUGUU--GGUAcGUUaGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 12923 | 0.67 | 0.850057 |
Target: 5'- gUGGUGuucGCCACaAGCUcgGCcagCGCGCu -3' miRNA: 3'- -ACCGU---UGGUG-UUGGuaCGuuaGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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