miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30935 5' -51.6 NC_006552.1 + 64163 0.67 0.858642
Target:  5'- cUGGCGcACgCGcCGACCAguucgGCAuccccGUCGUGCa -3'
miRNA:   3'- -ACCGU-UG-GU-GUUGGUa----CGU-----UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 64116 0.68 0.831261
Target:  5'- cGGaCGACCGCaAGCUGUGCcuGAuucgcaacgcagcUCGCGCc -3'
miRNA:   3'- aCC-GUUGGUG-UUGGUACG--UU-------------AGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 63200 0.67 0.866979
Target:  5'- aGGCGuuguccugGCCGCAACgGUgaacccucgcgGCAcgUGCGCc -3'
miRNA:   3'- aCCGU--------UGGUGUUGgUA-----------CGUuaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 63077 0.66 0.900538
Target:  5'- gGGCAugGCCaACGccgucgccgagaacuGCCGUGCGAUgGUGg -3'
miRNA:   3'- aCCGU--UGG-UGU---------------UGGUACGUUAgCGCg -5'
30935 5' -51.6 NC_006552.1 + 62758 0.66 0.917841
Target:  5'- gGGCGcuGCCGC-GCC-UGCGAgCGaCGCc -3'
miRNA:   3'- aCCGU--UGGUGuUGGuACGUUaGC-GCG- -5'
30935 5' -51.6 NC_006552.1 + 62226 0.73 0.564198
Target:  5'- gGGCGgaucACCGagucCAGCCAcGgAAUCGCGCg -3'
miRNA:   3'- aCCGU----UGGU----GUUGGUaCgUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 61690 0.66 0.904702
Target:  5'- cUGGCcgcucGACCAC-GCCG-GCAuccucaccgCGCGCg -3'
miRNA:   3'- -ACCG-----UUGGUGuUGGUaCGUua-------GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 61369 0.69 0.78382
Target:  5'- cGGgAGCCG-GGCCAUGUuuUgGCGCg -3'
miRNA:   3'- aCCgUUGGUgUUGGUACGuuAgCGCG- -5'
30935 5' -51.6 NC_006552.1 + 61176 0.68 0.793867
Target:  5'- -uGCGACCAC-GCUcgGCAAgccUGCGCc -3'
miRNA:   3'- acCGUUGGUGuUGGuaCGUUa--GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 60560 0.69 0.763242
Target:  5'- cGGCGacucGCCGCAGgCAUGUcccucGAggaCGCGCu -3'
miRNA:   3'- aCCGU----UGGUGUUgGUACG-----UUa--GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 59822 0.69 0.773608
Target:  5'- aGGUgaugGACCugAACCGccGCuuuuccAUCGCGCa -3'
miRNA:   3'- aCCG----UUGGugUUGGUa-CGu-----UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 59341 0.7 0.687432
Target:  5'- cGGUAAcagcgucagcCCGCcGCCGauggcaGCGAUCGCGCg -3'
miRNA:   3'- aCCGUU----------GGUGuUGGUa-----CGUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 58902 0.66 0.904015
Target:  5'- cGGUAACCaacucggGCAGCCA-GCA---GCGCc -3'
miRNA:   3'- aCCGUUGG-------UGUUGGUaCGUuagCGCG- -5'
30935 5' -51.6 NC_006552.1 + 58632 0.68 0.822905
Target:  5'- gGGCAgacugaACCGCGACCggGCGA-CGaGCc -3'
miRNA:   3'- aCCGU------UGGUGUUGGuaCGUUaGCgCG- -5'
30935 5' -51.6 NC_006552.1 + 58119 0.66 0.888942
Target:  5'- gGGCAgcagaaguggaagACCGCAGCCGacUGCAucgacugGUCGUa- -3'
miRNA:   3'- aCCGU-------------UGGUGUUGGU--ACGU-------UAGCGcg -5'
30935 5' -51.6 NC_006552.1 + 57524 0.67 0.862007
Target:  5'- cGGCAaaaaaccacaguucuGCCGCAauuGCCAUGCAcacCGC-Ca -3'
miRNA:   3'- aCCGU---------------UGGUGU---UGGUACGUua-GCGcG- -5'
30935 5' -51.6 NC_006552.1 + 56858 0.68 0.841233
Target:  5'- cGGCAgcGCCGCGGCgAgcgGCGAaCGCa- -3'
miRNA:   3'- aCCGU--UGGUGUUGgUa--CGUUaGCGcg -5'
30935 5' -51.6 NC_006552.1 + 56444 0.68 0.841233
Target:  5'- gGGCGAUU-CAACCAUGCc-UCGUGg -3'
miRNA:   3'- aCCGUUGGuGUUGGUACGuuAGCGCg -5'
30935 5' -51.6 NC_006552.1 + 56262 0.67 0.875061
Target:  5'- cUGGCAGCCAaGGCCG-GC-GUC-CGCc -3'
miRNA:   3'- -ACCGUUGGUgUUGGUaCGuUAGcGCG- -5'
30935 5' -51.6 NC_006552.1 + 55681 0.66 0.89043
Target:  5'- cGGCuGCCAgGaaggggucgaucGCCggGCGAgaCGCGCa -3'
miRNA:   3'- aCCGuUGGUgU------------UGGuaCGUUa-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.