miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30940 3' -54.4 NC_006552.1 + 64707 0.65 0.847302
Target:  5'- -aUGaCCGCGCUCaugcgcaugcaaGACGACGugGCg -3'
miRNA:   3'- caGCaGGUGUGAGgg----------CUGUUGCugCG- -5'
30940 3' -54.4 NC_006552.1 + 34325 0.66 0.833535
Target:  5'- uGUUGgaCCACAggCCCG-CAuCGACGCg -3'
miRNA:   3'- -CAGCa-GGUGUgaGGGCuGUuGCUGCG- -5'
30940 3' -54.4 NC_006552.1 + 9060 0.66 0.824663
Target:  5'- aUCGUCCAgCACgUCCUGAaucucguGCGACa- -3'
miRNA:   3'- cAGCAGGU-GUG-AGGGCUgu-----UGCUGcg -5'
30940 3' -54.4 NC_006552.1 + 19975 0.67 0.796914
Target:  5'- -aCGUCCGC-CUUggCCGACucgcccuUGACGCg -3'
miRNA:   3'- caGCAGGUGuGAG--GGCUGuu-----GCUGCG- -5'
30940 3' -54.4 NC_006552.1 + 24992 0.67 0.796914
Target:  5'- uUCGU-CAgGCUCCuggccagccgcuCGACAGCGGCGg -3'
miRNA:   3'- cAGCAgGUgUGAGG------------GCUGUUGCUGCg -5'
30940 3' -54.4 NC_006552.1 + 32979 0.67 0.777567
Target:  5'- -gCGUCCugGCUCCCaGCGuccGgGAUGUc -3'
miRNA:   3'- caGCAGGugUGAGGGcUGU---UgCUGCG- -5'
30940 3' -54.4 NC_006552.1 + 32603 0.67 0.777567
Target:  5'- aGUUGUCCAC-CUCCCGguGCAGagcCGAUa- -3'
miRNA:   3'- -CAGCAGGUGuGAGGGC--UGUU---GCUGcg -5'
30940 3' -54.4 NC_006552.1 + 57909 0.67 0.75764
Target:  5'- ---uUCCugAUUCCCGACcccaAACGcCGCg -3'
miRNA:   3'- cagcAGGugUGAGGGCUG----UUGCuGCG- -5'
30940 3' -54.4 NC_006552.1 + 32319 0.68 0.751561
Target:  5'- cGUCGgCCugGCUCUCGugGaucagccugccgcgcACGGCGg -3'
miRNA:   3'- -CAGCaGGugUGAGGGCugU---------------UGCUGCg -5'
30940 3' -54.4 NC_006552.1 + 33450 0.68 0.737217
Target:  5'- cUUGcCCGC-CUCCgCGACGGCaGCGCc -3'
miRNA:   3'- cAGCaGGUGuGAGG-GCUGUUGcUGCG- -5'
30940 3' -54.4 NC_006552.1 + 53297 0.68 0.726847
Target:  5'- -aCGgCCGCGCagCCCGcCGcGCGGCGCa -3'
miRNA:   3'- caGCaGGUGUGa-GGGCuGU-UGCUGCG- -5'
30940 3' -54.4 NC_006552.1 + 7997 0.68 0.725805
Target:  5'- -aCGUCCACugUguacuugccgaagCgCGACAGCGGUGCa -3'
miRNA:   3'- caGCAGGUGugA-------------GgGCUGUUGCUGCG- -5'
30940 3' -54.4 NC_006552.1 + 20807 0.68 0.716386
Target:  5'- -gUGaUCC-CGCUCgcguCCGGCGGCGugGCg -3'
miRNA:   3'- caGC-AGGuGUGAG----GGCUGUUGCugCG- -5'
30940 3' -54.4 NC_006552.1 + 11310 0.68 0.695235
Target:  5'- -aCGUCCAUGcCUCCCuggauguCGGCGGCGUc -3'
miRNA:   3'- caGCAGGUGU-GAGGGcu-----GUUGCUGCG- -5'
30940 3' -54.4 NC_006552.1 + 35282 0.68 0.695235
Target:  5'- aUCGgggcucaugCCGCGCagggcgUCCGACAugGAUGCc -3'
miRNA:   3'- cAGCa--------GGUGUGa-----GGGCUGUugCUGCG- -5'
30940 3' -54.4 NC_006552.1 + 25699 0.69 0.684565
Target:  5'- aGUCccaugCCGCACUCCUGcGCAGCGAUu- -3'
miRNA:   3'- -CAGca---GGUGUGAGGGC-UGUUGCUGcg -5'
30940 3' -54.4 NC_006552.1 + 5257 0.7 0.630695
Target:  5'- gGUCGUCgCACGCcugccgguaguUgCCGGCGagcaagucGCGGCGCa -3'
miRNA:   3'- -CAGCAG-GUGUG-----------AgGGCUGU--------UGCUGCG- -5'
30940 3' -54.4 NC_006552.1 + 44087 0.7 0.619886
Target:  5'- uUCGccgCCGCGCUCuuGGC--CGGCGCc -3'
miRNA:   3'- cAGCa--GGUGUGAGggCUGuuGCUGCG- -5'
30940 3' -54.4 NC_006552.1 + 12714 0.7 0.609088
Target:  5'- cGUCGUagcgaauaCGCugUUCCGGCGucaGGCGCa -3'
miRNA:   3'- -CAGCAg-------GUGugAGGGCUGUug-CUGCG- -5'
30940 3' -54.4 NC_006552.1 + 29296 0.7 0.587557
Target:  5'- ---aUUCGCGCcCCaCGGCGGCGGCGCa -3'
miRNA:   3'- cagcAGGUGUGaGG-GCUGUUGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.