Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 64707 | 0.65 | 0.847302 |
Target: 5'- -aUGaCCGCGCUCaugcgcaugcaaGACGACGugGCg -3' miRNA: 3'- caGCaGGUGUGAGgg----------CUGUUGCugCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 34325 | 0.66 | 0.833535 |
Target: 5'- uGUUGgaCCACAggCCCG-CAuCGACGCg -3' miRNA: 3'- -CAGCa-GGUGUgaGGGCuGUuGCUGCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 9060 | 0.66 | 0.824663 |
Target: 5'- aUCGUCCAgCACgUCCUGAaucucguGCGACa- -3' miRNA: 3'- cAGCAGGU-GUG-AGGGCUgu-----UGCUGcg -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 19975 | 0.67 | 0.796914 |
Target: 5'- -aCGUCCGC-CUUggCCGACucgcccuUGACGCg -3' miRNA: 3'- caGCAGGUGuGAG--GGCUGuu-----GCUGCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 24992 | 0.67 | 0.796914 |
Target: 5'- uUCGU-CAgGCUCCuggccagccgcuCGACAGCGGCGg -3' miRNA: 3'- cAGCAgGUgUGAGG------------GCUGUUGCUGCg -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 32979 | 0.67 | 0.777567 |
Target: 5'- -gCGUCCugGCUCCCaGCGuccGgGAUGUc -3' miRNA: 3'- caGCAGGugUGAGGGcUGU---UgCUGCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 32603 | 0.67 | 0.777567 |
Target: 5'- aGUUGUCCAC-CUCCCGguGCAGagcCGAUa- -3' miRNA: 3'- -CAGCAGGUGuGAGGGC--UGUU---GCUGcg -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 57909 | 0.67 | 0.75764 |
Target: 5'- ---uUCCugAUUCCCGACcccaAACGcCGCg -3' miRNA: 3'- cagcAGGugUGAGGGCUG----UUGCuGCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 32319 | 0.68 | 0.751561 |
Target: 5'- cGUCGgCCugGCUCUCGugGaucagccugccgcgcACGGCGg -3' miRNA: 3'- -CAGCaGGugUGAGGGCugU---------------UGCUGCg -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 33450 | 0.68 | 0.737217 |
Target: 5'- cUUGcCCGC-CUCCgCGACGGCaGCGCc -3' miRNA: 3'- cAGCaGGUGuGAGG-GCUGUUGcUGCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 53297 | 0.68 | 0.726847 |
Target: 5'- -aCGgCCGCGCagCCCGcCGcGCGGCGCa -3' miRNA: 3'- caGCaGGUGUGa-GGGCuGU-UGCUGCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 7997 | 0.68 | 0.725805 |
Target: 5'- -aCGUCCACugUguacuugccgaagCgCGACAGCGGUGCa -3' miRNA: 3'- caGCAGGUGugA-------------GgGCUGUUGCUGCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 20807 | 0.68 | 0.716386 |
Target: 5'- -gUGaUCC-CGCUCgcguCCGGCGGCGugGCg -3' miRNA: 3'- caGC-AGGuGUGAG----GGCUGUUGCugCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 11310 | 0.68 | 0.695235 |
Target: 5'- -aCGUCCAUGcCUCCCuggauguCGGCGGCGUc -3' miRNA: 3'- caGCAGGUGU-GAGGGcu-----GUUGCUGCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 35282 | 0.68 | 0.695235 |
Target: 5'- aUCGgggcucaugCCGCGCagggcgUCCGACAugGAUGCc -3' miRNA: 3'- cAGCa--------GGUGUGa-----GGGCUGUugCUGCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 25699 | 0.69 | 0.684565 |
Target: 5'- aGUCccaugCCGCACUCCUGcGCAGCGAUu- -3' miRNA: 3'- -CAGca---GGUGUGAGGGC-UGUUGCUGcg -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 5257 | 0.7 | 0.630695 |
Target: 5'- gGUCGUCgCACGCcugccgguaguUgCCGGCGagcaagucGCGGCGCa -3' miRNA: 3'- -CAGCAG-GUGUG-----------AgGGCUGU--------UGCUGCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 44087 | 0.7 | 0.619886 |
Target: 5'- uUCGccgCCGCGCUCuuGGC--CGGCGCc -3' miRNA: 3'- cAGCa--GGUGUGAGggCUGuuGCUGCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 12714 | 0.7 | 0.609088 |
Target: 5'- cGUCGUagcgaauaCGCugUUCCGGCGucaGGCGCa -3' miRNA: 3'- -CAGCAg-------GUGugAGGGCUGUug-CUGCG- -5' |
|||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 29296 | 0.7 | 0.587557 |
Target: 5'- ---aUUCGCGCcCCaCGGCGGCGGCGCa -3' miRNA: 3'- cagcAGGUGUGaGG-GCUGUUGCUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home