miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
30940	3'	-54.4	NC_006552.1	+	44087	0.7	0.619886
	Target:  5'- uUCGccgCCGCGCUCuuGGC--CGGCGCc -3' miRNA:   3'- cAGCa--GGUGUGAGggCUGuuGCUGCG- -5'
30940	3'	-54.4	NC_006552.1	+	44812	0.81	0.137121
	Target:  5'- aUCGUCCGCcCUCCCGGCgAACGGCcuGCa -3' miRNA:   3'- cAGCAGGUGuGAGGGCUG-UUGCUG--CG- -5'
30940	3'	-54.4	NC_006552.1	+	53297	0.68	0.726847
	Target:  5'- -aCGgCCGCGCagCCCGcCGcGCGGCGCa -3' miRNA:   3'- caGCaGGUGUGa-GGGCuGU-UGCUGCG- -5'
30940	3'	-54.4	NC_006552.1	+	56834	0.73	0.453617
	Target:  5'- gGUUGUCCGCAgCUUCCagggauucGGCAGCGcCGCg -3' miRNA:   3'- -CAGCAGGUGU-GAGGG--------CUGUUGCuGCG- -5'
30940	3'	-54.4	NC_006552.1	+	57909	0.67	0.75764
	Target:  5'- ---uUCCugAUUCCCGACcccaAACGcCGCg -3' miRNA:   3'- cagcAGGugUGAGGGCUG----UUGCuGCG- -5'
30940	3'	-54.4	NC_006552.1	+	58486	0.7	0.586484
	Target:  5'- uGUCGagCGCugugcuuCUCCCGGCAACacaucaaGGCGCa -3' miRNA:   3'- -CAGCagGUGu------GAGGGCUGUUG-------CUGCG- -5'
30940	3'	-54.4	NC_006552.1	+	64707	0.65	0.847302
	Target:  5'- -aUGaCCGCGCUCaugcgcaugcaaGACGACGugGCg -3' miRNA:   3'- caGCaGGUGUGAGgg----------CUGUUGCugCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home