miRNA display CGI


Results 41 - 60 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 3' -58.5 NC_006560.1 + 113196 0.67 0.741681
Target:  5'- gGCCGCUG-CUgCACCgCCGGGGUgCGCu- -3'
miRNA:   3'- -UGGUGGCuGA-GUGG-GGUCCUA-GCGuc -5'
30991 3' -58.5 NC_006560.1 + 75108 0.67 0.751199
Target:  5'- gAUCGCgCGGCUCgggGCCCUGGGGgcCGCGGc -3'
miRNA:   3'- -UGGUG-GCUGAG---UGGGGUCCUa-GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 109766 0.67 0.779111
Target:  5'- gGCCGCgCaGC-CGCCCCGGGGUgGCc- -3'
miRNA:   3'- -UGGUG-GcUGaGUGGGGUCCUAgCGuc -5'
30991 3' -58.5 NC_006560.1 + 60801 0.67 0.779111
Target:  5'- gGCCgACCGGgUCgGCCCCcccgAGGAgcccCGCGGg -3'
miRNA:   3'- -UGG-UGGCUgAG-UGGGG----UCCUa---GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 46379 0.67 0.779111
Target:  5'- gGCCGaguaCGugUcCGCCCCGGGggUGCuGg -3'
miRNA:   3'- -UGGUg---GCugA-GUGGGGUCCuaGCGuC- -5'
30991 3' -58.5 NC_006560.1 + 34976 0.67 0.779111
Target:  5'- uCCGCCGGgcccccCgggCGCCUCGGGGcCGCGGg -3'
miRNA:   3'- uGGUGGCU------Ga--GUGGGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 22388 0.67 0.779111
Target:  5'- cGCCcCCGGCUCggACCCC-GGcUCGgAGg -3'
miRNA:   3'- -UGGuGGCUGAG--UGGGGuCCuAGCgUC- -5'
30991 3' -58.5 NC_006560.1 + 12686 0.67 0.779111
Target:  5'- -gCGCCGACgauggCGCCCguGuGGUCgGCGGg -3'
miRNA:   3'- ugGUGGCUGa----GUGGGguC-CUAG-CGUC- -5'
30991 3' -58.5 NC_006560.1 + 533 0.67 0.779111
Target:  5'- gGCgGCCGGCcgCGCCCCGGGuccccggCGUc- -3'
miRNA:   3'- -UGgUGGCUGa-GUGGGGUCCua-----GCGuc -5'
30991 3' -58.5 NC_006560.1 + 142738 0.67 0.769923
Target:  5'- gGCCcggcggagcCCGGCgcccggGCCCCGGGggCGCGGg -3'
miRNA:   3'- -UGGu--------GGCUGag----UGGGGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 36829 0.67 0.767143
Target:  5'- uCCGCCGuACUCGCCCCccgcgccacgaggcGGGGUUcgaGCGu -3'
miRNA:   3'- uGGUGGC-UGAGUGGGG--------------UCCUAG---CGUc -5'
30991 3' -58.5 NC_006560.1 + 38740 0.67 0.757802
Target:  5'- gGCC-CCGGC-CGuggcgaugauggggUCCUGGGGUCGCAGa -3'
miRNA:   3'- -UGGuGGCUGaGU--------------GGGGUCCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 7288 0.67 0.754978
Target:  5'- uGCCGCCGGCUgcgaugacgacggagUGCCgCGGGggCGUGGa -3'
miRNA:   3'- -UGGUGGCUGA---------------GUGGgGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 110372 0.67 0.751199
Target:  5'- gGCCGCCgGGCaggCGCgCCAGGc-CGCAGa -3'
miRNA:   3'- -UGGUGG-CUGa--GUGgGGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 34258 0.68 0.722375
Target:  5'- cUCGCCc-CUCGCCCCGGGcguacCGCGGg -3'
miRNA:   3'- uGGUGGcuGAGUGGGGUCCua---GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 22937 0.68 0.722375
Target:  5'- gGCCGCCGGCgcgccCGCCCCGuguGGG-CGCc- -3'
miRNA:   3'- -UGGUGGCUGa----GUGGGGU---CCUaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 23329 0.68 0.722375
Target:  5'- cGCgGCCGGCgccgcgccgcCGCCCCGGGA-CGCc- -3'
miRNA:   3'- -UGgUGGCUGa---------GUGGGGUCCUaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 106760 0.68 0.722375
Target:  5'- gACCugCGGgaCGCCCUGGGc-CGCAGc -3'
miRNA:   3'- -UGGugGCUgaGUGGGGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 15825 0.68 0.722375
Target:  5'- aGCCGcCCGACguggagucggUCGCCgaCCAGGAucUCGUAGu -3'
miRNA:   3'- -UGGU-GGCUG----------AGUGG--GGUCCU--AGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 11154 0.68 0.722375
Target:  5'- gGCgGCgCGGCgagCGCgagaguUCCGGGAUCGCGGg -3'
miRNA:   3'- -UGgUG-GCUGa--GUG------GGGUCCUAGCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.