miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 3' -58.5 NC_006560.1 + 119388 0.66 0.817913
Target:  5'- aACCGCCGGCUgCAcgcccucguggucuuCCCCGGcGGcuUCGCGu -3'
miRNA:   3'- -UGGUGGCUGA-GU---------------GGGGUC-CU--AGCGUc -5'
30991 3' -58.5 NC_006560.1 + 32691 0.66 0.814506
Target:  5'- gGCCgggGCCGgggGCUcCGCCCgAGGGcgCGCGGg -3'
miRNA:   3'- -UGG---UGGC---UGA-GUGGGgUCCUa-GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 2234 0.66 0.814506
Target:  5'- gGCCGCagCGGCgcacccagGCCCCAGcGcgCGCAGg -3'
miRNA:   3'- -UGGUG--GCUGag------UGGGGUC-CuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 126187 0.66 0.814506
Target:  5'- gUCACC-ACUCGCCCaCGGucUCGUAGa -3'
miRNA:   3'- uGGUGGcUGAGUGGG-GUCcuAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 122487 0.66 0.814506
Target:  5'- -gCACCcGCUCcCCCCagccGGGAUCGCc- -3'
miRNA:   3'- ugGUGGcUGAGuGGGG----UCCUAGCGuc -5'
30991 3' -58.5 NC_006560.1 + 82958 0.66 0.814506
Target:  5'- uACCGCCu-CUCGCCCCGauGGGcCGCc- -3'
miRNA:   3'- -UGGUGGcuGAGUGGGGU--CCUaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 82595 0.66 0.81365
Target:  5'- gGCCG-CGGCUCGCCCCGaggccccGGAcgGCGGc -3'
miRNA:   3'- -UGGUgGCUGAGUGGGGU-------CCUagCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149292 0.66 0.805878
Target:  5'- cGCC-CCGGCcCGCCCCGGcccaaccCGCGGa -3'
miRNA:   3'- -UGGuGGCUGaGUGGGGUCcua----GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 142738 0.67 0.769923
Target:  5'- gGCCcggcggagcCCGGCgcccggGCCCCGGGggCGCGGg -3'
miRNA:   3'- -UGGu--------GGCUGag----UGGGGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 36829 0.67 0.767143
Target:  5'- uCCGCCGuACUCGCCCCccgcgccacgaggcGGGGUUcgaGCGu -3'
miRNA:   3'- uGGUGGC-UGAGUGGGG--------------UCCUAG---CGUc -5'
30991 3' -58.5 NC_006560.1 + 38740 0.67 0.757802
Target:  5'- gGCC-CCGGC-CGuggcgaugauggggUCCUGGGGUCGCAGa -3'
miRNA:   3'- -UGGuGGCUGaGU--------------GGGGUCCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 7288 0.67 0.754978
Target:  5'- uGCCGCCGGCUgcgaugacgacggagUGCCgCGGGggCGUGGa -3'
miRNA:   3'- -UGGUGGCUGA---------------GUGGgGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 110372 0.67 0.751199
Target:  5'- gGCCGCCgGGCaggCGCgCCAGGc-CGCAGa -3'
miRNA:   3'- -UGGUGG-CUGa--GUGgGGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 533 0.67 0.779111
Target:  5'- gGCgGCCGGCcgCGCCCCGGGuccccggCGUc- -3'
miRNA:   3'- -UGgUGGCUGa-GUGGGGUCCua-----GCGuc -5'
30991 3' -58.5 NC_006560.1 + 12686 0.67 0.779111
Target:  5'- -gCGCCGACgauggCGCCCguGuGGUCgGCGGg -3'
miRNA:   3'- ugGUGGCUGa----GUGGGguC-CUAG-CGUC- -5'
30991 3' -58.5 NC_006560.1 + 22388 0.67 0.779111
Target:  5'- cGCCcCCGGCUCggACCCC-GGcUCGgAGg -3'
miRNA:   3'- -UGGuGGCUGAG--UGGGGuCCuAGCgUC- -5'
30991 3' -58.5 NC_006560.1 + 34976 0.67 0.779111
Target:  5'- uCCGCCGGgcccccCgggCGCCUCGGGGcCGCGGg -3'
miRNA:   3'- uGGUGGCU------Ga--GUGGGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 46379 0.67 0.779111
Target:  5'- gGCCGaguaCGugUcCGCCCCGGGggUGCuGg -3'
miRNA:   3'- -UGGUg---GCugA-GUGGGGUCCuaGCGuC- -5'
30991 3' -58.5 NC_006560.1 + 60801 0.67 0.779111
Target:  5'- gGCCgACCGGgUCgGCCCCcccgAGGAgcccCGCGGg -3'
miRNA:   3'- -UGG-UGGCUgAG-UGGGG----UCCUa---GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 75108 0.67 0.751199
Target:  5'- gAUCGCgCGGCUCgggGCCCUGGGGgcCGCGGc -3'
miRNA:   3'- -UGGUG-GCUGAG---UGGGGUCCUa-GCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.