miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 3' -58.5 NC_006560.1 + 12686 0.67 0.779111
Target:  5'- -gCGCCGACgauggCGCCCguGuGGUCgGCGGg -3'
miRNA:   3'- ugGUGGCUGa----GUGGGguC-CUAG-CGUC- -5'
30991 3' -58.5 NC_006560.1 + 15341 0.67 0.73207
Target:  5'- cGCgGCCGGCgcgg-CCGGGGUCGCGGu -3'
miRNA:   3'- -UGgUGGCUGaguggGGUCCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 15825 0.68 0.722375
Target:  5'- aGCCGcCCGACguggagucggUCGCCgaCCAGGAucUCGUAGu -3'
miRNA:   3'- -UGGU-GGCUG----------AGUGG--GGUCCU--AGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 21701 0.73 0.413712
Target:  5'- cGCCGCCGGCcgcccccgCGCCCCGGGG-CGgAGc -3'
miRNA:   3'- -UGGUGGCUGa-------GUGGGGUCCUaGCgUC- -5'
30991 3' -58.5 NC_006560.1 + 22388 0.67 0.779111
Target:  5'- cGCCcCCGGCUCggACCCC-GGcUCGgAGg -3'
miRNA:   3'- -UGGuGGCUGAG--UGGGGuCCuAGCgUC- -5'
30991 3' -58.5 NC_006560.1 + 22640 0.66 0.797097
Target:  5'- cGCCGCCGAgacgggcgUCGCCgCCGGG--CGCAGc -3'
miRNA:   3'- -UGGUGGCUg-------AGUGG-GGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 22937 0.68 0.722375
Target:  5'- gGCCGCCGGCgcgccCGCCCCGuguGGG-CGCc- -3'
miRNA:   3'- -UGGUGGCUGa----GUGGGGU---CCUaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 23329 0.68 0.722375
Target:  5'- cGCgGCCGGCgccgcgccgcCGCCCCGGGA-CGCc- -3'
miRNA:   3'- -UGgUGGCUGa---------GUGGGGUCCUaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 24675 0.66 0.797097
Target:  5'- cGCCGCCGGCcgcCGCCUCGucGUCGUGGa -3'
miRNA:   3'- -UGGUGGCUGa--GUGGGGUccUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 25046 0.71 0.49491
Target:  5'- cGCCGCCGACUCGCCCgCGcGcGAg-GCGGc -3'
miRNA:   3'- -UGGUGGCUGAGUGGG-GU-C-CUagCGUC- -5'
30991 3' -58.5 NC_006560.1 + 27358 0.7 0.562723
Target:  5'- cGCCGCCGAacCGCCCCgccGGGAaacgcggCGCGGg -3'
miRNA:   3'- -UGGUGGCUgaGUGGGG---UCCUa------GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 27781 0.71 0.493967
Target:  5'- gGCCACCGACgccgCGCCCgGccgccguuccuucGGcgCGCGGg -3'
miRNA:   3'- -UGGUGGCUGa---GUGGGgU-------------CCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 30617 0.75 0.326442
Target:  5'- cCCGCCGACUCGCCCauccuGAUCGCc- -3'
miRNA:   3'- uGGUGGCUGAGUGGGguc--CUAGCGuc -5'
30991 3' -58.5 NC_006560.1 + 30885 0.67 0.73207
Target:  5'- cCCACacccaGACccCGCCCCGGGcccaggCGCAGa -3'
miRNA:   3'- uGGUGg----CUGa-GUGGGGUCCua----GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 32470 0.7 0.572642
Target:  5'- gGCUGCgGGCUC-CCCCGGGGcgccaGCAGg -3'
miRNA:   3'- -UGGUGgCUGAGuGGGGUCCUag---CGUC- -5'
30991 3' -58.5 NC_006560.1 + 32691 0.66 0.814506
Target:  5'- gGCCgggGCCGgggGCUcCGCCCgAGGGcgCGCGGg -3'
miRNA:   3'- -UGG---UGGC---UGA-GUGGGgUCCUa-GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 33358 0.66 0.797097
Target:  5'- cGCgGCCGuCUCGCgCCCgcggcGGGGcCGCGGa -3'
miRNA:   3'- -UGgUGGCuGAGUG-GGG-----UCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 33491 0.66 0.784563
Target:  5'- gGCCGCCGGCagggaggcgggcgCcgGCCCgGGGGUCGgGGu -3'
miRNA:   3'- -UGGUGGCUGa------------G--UGGGgUCCUAGCgUC- -5'
30991 3' -58.5 NC_006560.1 + 34258 0.68 0.722375
Target:  5'- cUCGCCc-CUCGCCCCGGGcguacCGCGGg -3'
miRNA:   3'- uGGUGGcuGAGUGGGGUCCua---GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 34373 0.66 0.788172
Target:  5'- -gCGCCcGC-CGCCUCGGGGUCGCc- -3'
miRNA:   3'- ugGUGGcUGaGUGGGGUCCUAGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.