miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 3' -58.5 NC_006560.1 + 533 0.67 0.779111
Target:  5'- gGCgGCCGGCcgCGCCCCGGGuccccggCGUc- -3'
miRNA:   3'- -UGgUGGCUGa-GUGGGGUCCua-----GCGuc -5'
30991 3' -58.5 NC_006560.1 + 635 0.67 0.731104
Target:  5'- gGCUcUCGGCUUccgcacgGCCCCAGGuUCGCAc -3'
miRNA:   3'- -UGGuGGCUGAG-------UGGGGUCCuAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 1925 0.84 0.087839
Target:  5'- gGCCGCCGGCUCGCCguccgggucccaguCCGGGGUCGCGc -3'
miRNA:   3'- -UGGUGGCUGAGUGG--------------GGUCCUAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 2234 0.66 0.814506
Target:  5'- gGCCGCagCGGCgcacccagGCCCCAGcGcgCGCAGg -3'
miRNA:   3'- -UGGUG--GCUGag------UGGGGUC-CuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 4525 0.72 0.457852
Target:  5'- gGCCGCCGuagaGCacgCGCCCCGGGggCGgGGg -3'
miRNA:   3'- -UGGUGGC----UGa--GUGGGGUCCuaGCgUC- -5'
30991 3' -58.5 NC_006560.1 + 5080 0.68 0.682934
Target:  5'- gUCGCCGGCgugcggCGCgccgCCCGGGGUCgGCGGg -3'
miRNA:   3'- uGGUGGCUGa-----GUG----GGGUCCUAG-CGUC- -5'
30991 3' -58.5 NC_006560.1 + 5136 0.68 0.692877
Target:  5'- -aCACCGACUCGCggcgcggggCCCGGGccggggcCGCGGg -3'
miRNA:   3'- ugGUGGCUGAGUG---------GGGUCCua-----GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 5653 0.81 0.140738
Target:  5'- cGCCcgGCCGGCUcCGCCCCGGGG-CGCGGg -3'
miRNA:   3'- -UGG--UGGCUGA-GUGGGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 5683 0.71 0.543033
Target:  5'- gGCgGCCGGCggCGCCgCCcgucgAGGAUCGCAu -3'
miRNA:   3'- -UGgUGGCUGa-GUGG-GG-----UCCUAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 5722 0.7 0.562723
Target:  5'- uGCgGCCGGCggCGCCgCCcgucgAGGAUCGCAu -3'
miRNA:   3'- -UGgUGGCUGa-GUGG-GG-----UCCUAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 6493 0.65 0.828803
Target:  5'- cGCCgcGCCGACggaaccUCGCaggugagcggucguCCCGGGAUCGCc- -3'
miRNA:   3'- -UGG--UGGCUG------AGUG--------------GGGUCCUAGCGuc -5'
30991 3' -58.5 NC_006560.1 + 7288 0.67 0.754978
Target:  5'- uGCCGCCGGCUgcgaugacgacggagUGCCgCGGGggCGUGGa -3'
miRNA:   3'- -UGGUGGCUGA---------------GUGGgGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 7410 0.68 0.672952
Target:  5'- cCCGCCGGCcCcgggACCCCAGGcagcccCGCGGa -3'
miRNA:   3'- uGGUGGCUGaG----UGGGGUCCua----GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 9549 0.7 0.552852
Target:  5'- gGCCGgCGGCggccaGCCCCAGGGcCGCGc -3'
miRNA:   3'- -UGGUgGCUGag---UGGGGUCCUaGCGUc -5'
30991 3' -58.5 NC_006560.1 + 9709 0.66 0.797097
Target:  5'- cGCCGCggugcugacgaCGACgUgGCCCCAGGcgUGCAc -3'
miRNA:   3'- -UGGUG-----------GCUG-AgUGGGGUCCuaGCGUc -5'
30991 3' -58.5 NC_006560.1 + 9781 0.73 0.396804
Target:  5'- cCCGCCG-CUCGCCUCggAGGcGUCGCGGa -3'
miRNA:   3'- uGGUGGCuGAGUGGGG--UCC-UAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 11154 0.68 0.722375
Target:  5'- gGCgGCgCGGCgagCGCgagaguUCCGGGAUCGCGGg -3'
miRNA:   3'- -UGgUG-GCUGa--GUG------GGGUCCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 11191 0.66 0.788172
Target:  5'- gGCCuCgGACUC-CUCCGaGAUCGCGGu -3'
miRNA:   3'- -UGGuGgCUGAGuGGGGUcCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 11393 0.67 0.741681
Target:  5'- cACCGCCGACcgaggCAgcaggcgcagcuCCCCAGGGccaCGCAa -3'
miRNA:   3'- -UGGUGGCUGa----GU------------GGGGUCCUa--GCGUc -5'
30991 3' -58.5 NC_006560.1 + 11578 0.68 0.70277
Target:  5'- gACCuCCG-C-CGCCUCgGGGGUCGCGGg -3'
miRNA:   3'- -UGGuGGCuGaGUGGGG-UCCUAGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.