miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 3' -58.5 NC_006560.1 + 149990 0.66 0.822975
Target:  5'- cGCUACCGggGC-CGCgCUCGGGAcCGCGGg -3'
miRNA:   3'- -UGGUGGC--UGaGUG-GGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149752 0.76 0.278415
Target:  5'- gACCACCGAC---CCCCGGGG-CGCGGg -3'
miRNA:   3'- -UGGUGGCUGaguGGGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149717 1.09 0.001802
Target:  5'- aACCACCGACUCACCCCAGGAUCGCAGg -3'
miRNA:   3'- -UGGUGGCUGAGUGGGGUCCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149668 1.01 0.006158
Target:  5'- gACCACCGACUCACCCCAGGAcCGCAGg -3'
miRNA:   3'- -UGGUGGCUGAGUGGGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149630 0.93 0.022099
Target:  5'- gACCACCGACUCACCCCAGGAcCGCc- -3'
miRNA:   3'- -UGGUGGCUGAGUGGGGUCCUaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 149580 1.01 0.006158
Target:  5'- gACCACCGACUCACCCCAGGAcCGCAGg -3'
miRNA:   3'- -UGGUGGCUGAGUGGGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149530 1.01 0.006158
Target:  5'- gACCACCGACUCACCCCAGGAcCGCAGg -3'
miRNA:   3'- -UGGUGGCUGAGUGGGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149292 0.66 0.805878
Target:  5'- cGCC-CCGGCcCGCCCCGGcccaaccCGCGGa -3'
miRNA:   3'- -UGGuGGCUGaGUGGGGUCcua----GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 144980 0.66 0.788172
Target:  5'- cCCcCCGACggACCCCGGGccCGCGc -3'
miRNA:   3'- uGGuGGCUGagUGGGGUCCuaGCGUc -5'
30991 3' -58.5 NC_006560.1 + 143007 0.67 0.73207
Target:  5'- aGCCACCGAgaCGCCCggCGGGAcagGUAGg -3'
miRNA:   3'- -UGGUGGCUgaGUGGG--GUCCUag-CGUC- -5'
30991 3' -58.5 NC_006560.1 + 142738 0.67 0.769923
Target:  5'- gGCCcggcggagcCCGGCgcccggGCCCCGGGggCGCGGg -3'
miRNA:   3'- -UGGu--------GGCUGag----UGGGGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 135968 0.7 0.592595
Target:  5'- gAUCGCCGACaUCACCC--GGcgCGCGGu -3'
miRNA:   3'- -UGGUGGCUG-AGUGGGguCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 134653 0.76 0.29087
Target:  5'- gACCACgcACUCGCCCCcccgcccgccggcGGGGUCGCGGa -3'
miRNA:   3'- -UGGUGgcUGAGUGGGG-------------UCCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 133985 0.71 0.523574
Target:  5'- cCCcCCGGCUCgcGCCCCAGG-UCGgCGGc -3'
miRNA:   3'- uGGuGGCUGAG--UGGGGUCCuAGC-GUC- -5'
30991 3' -58.5 NC_006560.1 + 131406 0.72 0.457852
Target:  5'- gGCCGCgGACgcgCGCCCCuGGGcccgggccgUCGCGGc -3'
miRNA:   3'- -UGGUGgCUGa--GUGGGGuCCU---------AGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 128237 0.66 0.822975
Target:  5'- uCCAgCGGCUgGgCCCAGaGGUCcuGCAGg -3'
miRNA:   3'- uGGUgGCUGAgUgGGGUC-CUAG--CGUC- -5'
30991 3' -58.5 NC_006560.1 + 126187 0.66 0.814506
Target:  5'- gUCACC-ACUCGCCCaCGGucUCGUAGa -3'
miRNA:   3'- uGGUGGcUGAGUGGG-GUCcuAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 124999 0.68 0.70277
Target:  5'- cCCGCCGACgccggCgACCCCGuGGUCGCc- -3'
miRNA:   3'- uGGUGGCUGa----G-UGGGGUcCUAGCGuc -5'
30991 3' -58.5 NC_006560.1 + 122487 0.66 0.814506
Target:  5'- -gCACCcGCUCcCCCCagccGGGAUCGCc- -3'
miRNA:   3'- ugGUGGcUGAGuGGGG----UCCUAGCGuc -5'
30991 3' -58.5 NC_006560.1 + 120461 0.67 0.741681
Target:  5'- uGCUGCuCGGCUcCACCCgCGGGccgcgcAUCGCGGc -3'
miRNA:   3'- -UGGUG-GCUGA-GUGGG-GUCC------UAGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.