miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 3' -58.5 NC_006560.1 + 149717 1.09 0.001802
Target:  5'- aACCACCGACUCACCCCAGGAUCGCAGg -3'
miRNA:   3'- -UGGUGGCUGAGUGGGGUCCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149530 1.01 0.006158
Target:  5'- gACCACCGACUCACCCCAGGAcCGCAGg -3'
miRNA:   3'- -UGGUGGCUGAGUGGGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149580 1.01 0.006158
Target:  5'- gACCACCGACUCACCCCAGGAcCGCAGg -3'
miRNA:   3'- -UGGUGGCUGAGUGGGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149668 1.01 0.006158
Target:  5'- gACCACCGACUCACCCCAGGAcCGCAGg -3'
miRNA:   3'- -UGGUGGCUGAGUGGGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149630 0.93 0.022099
Target:  5'- gACCACCGACUCACCCCAGGAcCGCc- -3'
miRNA:   3'- -UGGUGGCUGAGUGGGGUCCUaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 1925 0.84 0.087839
Target:  5'- gGCCGCCGGCUCGCCguccgggucccaguCCGGGGUCGCGc -3'
miRNA:   3'- -UGGUGGCUGAGUGG--------------GGUCCUAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 54225 0.81 0.137214
Target:  5'- aGCCGCUGACUCGCCCgGGGAgggCGCc- -3'
miRNA:   3'- -UGGUGGCUGAGUGGGgUCCUa--GCGuc -5'
30991 3' -58.5 NC_006560.1 + 5653 0.81 0.140738
Target:  5'- cGCCcgGCCGGCUcCGCCCCGGGG-CGCGGg -3'
miRNA:   3'- -UGG--UGGCUGA-GUGGGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 55306 0.77 0.259621
Target:  5'- gUCACCuGCUgGCCCaCGGGGUCGCGGg -3'
miRNA:   3'- uGGUGGcUGAgUGGG-GUCCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 96000 0.76 0.277772
Target:  5'- aGCCGCCcGCgCGCCCCGGGAugcggccUCGCGGc -3'
miRNA:   3'- -UGGUGGcUGaGUGGGGUCCU-------AGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149752 0.76 0.278415
Target:  5'- gACCACCGAC---CCCCGGGG-CGCGGg -3'
miRNA:   3'- -UGGUGGCUGaguGGGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 77095 0.76 0.278415
Target:  5'- cGCCGCCGcCcgCGCCCaCAGGggCGCGGg -3'
miRNA:   3'- -UGGUGGCuGa-GUGGG-GUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 134653 0.76 0.29087
Target:  5'- gACCACgcACUCGCCCCcccgcccgccggcGGGGUCGCGGa -3'
miRNA:   3'- -UGGUGgcUGAGUGGGG-------------UCCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 55525 0.76 0.291537
Target:  5'- aGCCACCGcaGCUCgACCCCcucGGGGaCGCAGg -3'
miRNA:   3'- -UGGUGGC--UGAG-UGGGG---UCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 30617 0.75 0.326442
Target:  5'- cCCGCCGACUCGCCCauccuGAUCGCc- -3'
miRNA:   3'- uGGUGGCUGAGUGGGguc--CUAGCGuc -5'
30991 3' -58.5 NC_006560.1 + 101937 0.75 0.333785
Target:  5'- gUCGCCGAUggcgCGCgCCAGGGUCGCGa -3'
miRNA:   3'- uGGUGGCUGa---GUGgGGUCCUAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 84385 0.74 0.380347
Target:  5'- cGCCucCCGGCUCGCCCgcgacgacggCAGGggCGCGGc -3'
miRNA:   3'- -UGGu-GGCUGAGUGGG----------GUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 9781 0.73 0.396804
Target:  5'- cCCGCCG-CUCGCCUCggAGGcGUCGCGGa -3'
miRNA:   3'- uGGUGGCuGAGUGGGG--UCC-UAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 21701 0.73 0.413712
Target:  5'- cGCCGCCGGCcgcccccgCGCCCCGGGG-CGgAGc -3'
miRNA:   3'- -UGGUGGCUGa-------GUGGGGUCCUaGCgUC- -5'
30991 3' -58.5 NC_006560.1 + 67324 0.73 0.422331
Target:  5'- cACCGcCCGGggCGCUCCGGaGAUCGCGGg -3'
miRNA:   3'- -UGGU-GGCUgaGUGGGGUC-CUAGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.