miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 3' -58.5 NC_006560.1 + 42533 0.72 0.439888
Target:  5'- aGCCGCa-GCcccagCGCCCCGGGGUCGCGc -3'
miRNA:   3'- -UGGUGgcUGa----GUGGGGUCCUAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 4525 0.72 0.457852
Target:  5'- gGCCGCCGuagaGCacgCGCCCCGGGggCGgGGg -3'
miRNA:   3'- -UGGUGGC----UGa--GUGGGGUCCuaGCgUC- -5'
30991 3' -58.5 NC_006560.1 + 131406 0.72 0.457852
Target:  5'- gGCCGCgGACgcgCGCCCCuGGGcccgggccgUCGCGGc -3'
miRNA:   3'- -UGGUGgCUGa--GUGGGGuCCU---------AGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 113837 0.72 0.466064
Target:  5'- uACCACCaGCUgcggacgggccugCACCCCGGGAUCGg-- -3'
miRNA:   3'- -UGGUGGcUGA-------------GUGGGGUCCUAGCguc -5'
30991 3' -58.5 NC_006560.1 + 40487 0.72 0.466981
Target:  5'- aGCCcCUGGCUCGCCaggcgCAGGAggaucUCGCAGg -3'
miRNA:   3'- -UGGuGGCUGAGUGGg----GUCCU-----AGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 27781 0.71 0.493967
Target:  5'- gGCCACCGACgccgCGCCCgGccgccguuccuucGGcgCGCGGg -3'
miRNA:   3'- -UGGUGGCUGa---GUGGGgU-------------CCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 25046 0.71 0.49491
Target:  5'- cGCCGCCGACUCGCCCgCGcGcGAg-GCGGc -3'
miRNA:   3'- -UGGUGGCUGAGUGGG-GU-C-CUagCGUC- -5'
30991 3' -58.5 NC_006560.1 + 69664 0.71 0.49491
Target:  5'- cCCGCCGcgcccGC-CACCCCGGGGUCgGCGc -3'
miRNA:   3'- uGGUGGC-----UGaGUGGGGUCCUAG-CGUc -5'
30991 3' -58.5 NC_006560.1 + 133985 0.71 0.523574
Target:  5'- cCCcCCGGCUCgcGCCCCAGG-UCGgCGGc -3'
miRNA:   3'- uGGuGGCUGAG--UGGGGUCCuAGC-GUC- -5'
30991 3' -58.5 NC_006560.1 + 46322 0.71 0.543033
Target:  5'- cGCCcuaGCCGGC-CGCgCCCAGGGUagcucCGCGGg -3'
miRNA:   3'- -UGG---UGGCUGaGUG-GGGUCCUA-----GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 5683 0.71 0.543033
Target:  5'- gGCgGCCGGCggCGCCgCCcgucgAGGAUCGCAu -3'
miRNA:   3'- -UGgUGGCUGa-GUGG-GG-----UCCUAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 54681 0.7 0.552852
Target:  5'- aGCCGCCGGCcgCGCCCUcguaguccgugGGGGUCGgGu -3'
miRNA:   3'- -UGGUGGCUGa-GUGGGG-----------UCCUAGCgUc -5'
30991 3' -58.5 NC_006560.1 + 9549 0.7 0.552852
Target:  5'- gGCCGgCGGCggccaGCCCCAGGGcCGCGc -3'
miRNA:   3'- -UGGUgGCUGag---UGGGGUCCUaGCGUc -5'
30991 3' -58.5 NC_006560.1 + 5722 0.7 0.562723
Target:  5'- uGCgGCCGGCggCGCCgCCcgucgAGGAUCGCAu -3'
miRNA:   3'- -UGgUGGCUGa-GUGG-GG-----UCCUAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 27358 0.7 0.562723
Target:  5'- cGCCGCCGAacCGCCCCgccGGGAaacgcggCGCGGg -3'
miRNA:   3'- -UGGUGGCUgaGUGGGG---UCCUa------GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 49078 0.7 0.566686
Target:  5'- uCCGCCGGCUCcgagggcgccgagguGCUCCGGGAgcaCGCGu -3'
miRNA:   3'- uGGUGGCUGAG---------------UGGGGUCCUa--GCGUc -5'
30991 3' -58.5 NC_006560.1 + 32470 0.7 0.572642
Target:  5'- gGCUGCgGGCUC-CCCCGGGGcgccaGCAGg -3'
miRNA:   3'- -UGGUGgCUGAGuGGGGUCCUag---CGUC- -5'
30991 3' -58.5 NC_006560.1 + 44149 0.7 0.582601
Target:  5'- -aCAgCGGCUCGgcCCCCAGGGU-GCAGu -3'
miRNA:   3'- ugGUgGCUGAGU--GGGGUCCUAgCGUC- -5'
30991 3' -58.5 NC_006560.1 + 35172 0.7 0.592595
Target:  5'- gGCCGCCGGgcccggggcCcCGCCCCGGGggCGcCGGg -3'
miRNA:   3'- -UGGUGGCU---------GaGUGGGGUCCuaGC-GUC- -5'
30991 3' -58.5 NC_006560.1 + 112260 0.7 0.592595
Target:  5'- -gCGCCGGCUCGCCCaCGgccgccuccgcuGGGUgGCGGa -3'
miRNA:   3'- ugGUGGCUGAGUGGG-GU------------CCUAgCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.