miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 3' -58.5 NC_006560.1 + 77602 0.66 0.797097
Target:  5'- gGCCGCCGAgCUguaCGCCgCCcuGGUCGCGa -3'
miRNA:   3'- -UGGUGGCU-GA---GUGG-GGucCUAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 88909 0.66 0.797097
Target:  5'- cGCCgGCCGGCcgugccugUCGCuCCCGGGcgCGCu- -3'
miRNA:   3'- -UGG-UGGCUG--------AGUG-GGGUCCuaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 119311 0.66 0.797097
Target:  5'- cGCCGCCcaauGC-CGCCCgCAGGGUCuGCGa -3'
miRNA:   3'- -UGGUGGc---UGaGUGGG-GUCCUAG-CGUc -5'
30991 3' -58.5 NC_006560.1 + 11191 0.66 0.788172
Target:  5'- gGCCuCgGACUC-CUCCGaGAUCGCGGu -3'
miRNA:   3'- -UGGuGgCUGAGuGGGGUcCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 34373 0.66 0.788172
Target:  5'- -gCGCCcGC-CGCCUCGGGGUCGCc- -3'
miRNA:   3'- ugGUGGcUGaGUGGGGUCCUAGCGuc -5'
30991 3' -58.5 NC_006560.1 + 68443 0.66 0.788172
Target:  5'- cACCG-CGGC-CGCCCUGGGGccggCGCGGa -3'
miRNA:   3'- -UGGUgGCUGaGUGGGGUCCUa---GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 144980 0.66 0.788172
Target:  5'- cCCcCCGACggACCCCGGGccCGCGc -3'
miRNA:   3'- uGGuGGCUGagUGGGGUCCuaGCGUc -5'
30991 3' -58.5 NC_006560.1 + 33491 0.66 0.784563
Target:  5'- gGCCGCCGGCagggaggcgggcgCcgGCCCgGGGGUCGgGGu -3'
miRNA:   3'- -UGGUGGCUGa------------G--UGGGgUCCUAGCgUC- -5'
30991 3' -58.5 NC_006560.1 + 533 0.67 0.779111
Target:  5'- gGCgGCCGGCcgCGCCCCGGGuccccggCGUc- -3'
miRNA:   3'- -UGgUGGCUGa-GUGGGGUCCua-----GCGuc -5'
30991 3' -58.5 NC_006560.1 + 12686 0.67 0.779111
Target:  5'- -gCGCCGACgauggCGCCCguGuGGUCgGCGGg -3'
miRNA:   3'- ugGUGGCUGa----GUGGGguC-CUAG-CGUC- -5'
30991 3' -58.5 NC_006560.1 + 22388 0.67 0.779111
Target:  5'- cGCCcCCGGCUCggACCCC-GGcUCGgAGg -3'
miRNA:   3'- -UGGuGGCUGAG--UGGGGuCCuAGCgUC- -5'
30991 3' -58.5 NC_006560.1 + 34976 0.67 0.779111
Target:  5'- uCCGCCGGgcccccCgggCGCCUCGGGGcCGCGGg -3'
miRNA:   3'- uGGUGGCU------Ga--GUGGGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 46379 0.67 0.779111
Target:  5'- gGCCGaguaCGugUcCGCCCCGGGggUGCuGg -3'
miRNA:   3'- -UGGUg---GCugA-GUGGGGUCCuaGCGuC- -5'
30991 3' -58.5 NC_006560.1 + 60801 0.67 0.779111
Target:  5'- gGCCgACCGGgUCgGCCCCcccgAGGAgcccCGCGGg -3'
miRNA:   3'- -UGG-UGGCUgAG-UGGGG----UCCUa---GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 109766 0.67 0.779111
Target:  5'- gGCCGCgCaGC-CGCCCCGGGGUgGCc- -3'
miRNA:   3'- -UGGUG-GcUGaGUGGGGUCCUAgCGuc -5'
30991 3' -58.5 NC_006560.1 + 142738 0.67 0.769923
Target:  5'- gGCCcggcggagcCCGGCgcccggGCCCCGGGggCGCGGg -3'
miRNA:   3'- -UGGu--------GGCUGag----UGGGGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 36829 0.67 0.767143
Target:  5'- uCCGCCGuACUCGCCCCccgcgccacgaggcGGGGUUcgaGCGu -3'
miRNA:   3'- uGGUGGC-UGAGUGGGG--------------UCCUAG---CGUc -5'
30991 3' -58.5 NC_006560.1 + 38740 0.67 0.757802
Target:  5'- gGCC-CCGGC-CGuggcgaugauggggUCCUGGGGUCGCAGa -3'
miRNA:   3'- -UGGuGGCUGaGU--------------GGGGUCCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 7288 0.67 0.754978
Target:  5'- uGCCGCCGGCUgcgaugacgacggagUGCCgCGGGggCGUGGa -3'
miRNA:   3'- -UGGUGGCUGA---------------GUGGgGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 75108 0.67 0.751199
Target:  5'- gAUCGCgCGGCUCgggGCCCUGGGGgcCGCGGc -3'
miRNA:   3'- -UGGUG-GCUGAG---UGGGGUCCUa-GCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.