miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 3' -58.5 NC_006560.1 + 75108 0.67 0.751199
Target:  5'- gAUCGCgCGGCUCgggGCCCUGGGGgcCGCGGc -3'
miRNA:   3'- -UGGUG-GCUGAG---UGGGGUCCUa-GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 120461 0.67 0.741681
Target:  5'- uGCUGCuCGGCUcCACCCgCGGGccgcgcAUCGCGGc -3'
miRNA:   3'- -UGGUG-GCUGA-GUGGG-GUCC------UAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 11393 0.67 0.741681
Target:  5'- cACCGCCGACcgaggCAgcaggcgcagcuCCCCAGGGccaCGCAa -3'
miRNA:   3'- -UGGUGGCUGa----GU------------GGGGUCCUa--GCGUc -5'
30991 3' -58.5 NC_006560.1 + 65269 0.67 0.741681
Target:  5'- uCCGCCGuCaccgUCACCCCGcuGGcccgGUCGCAGu -3'
miRNA:   3'- uGGUGGCuG----AGUGGGGU--CC----UAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 55981 0.67 0.741681
Target:  5'- gGCC-CCGGgUCcagagguacgACCCCuGGGUCGCGc -3'
miRNA:   3'- -UGGuGGCUgAG----------UGGGGuCCUAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 106454 0.67 0.741681
Target:  5'- gACCGCCGGCUCucgGCCCUcGcGcUCGCGu -3'
miRNA:   3'- -UGGUGGCUGAG---UGGGGuC-CuAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 113196 0.67 0.741681
Target:  5'- gGCCGCUG-CUgCACCgCCGGGGUgCGCu- -3'
miRNA:   3'- -UGGUGGCuGA-GUGG-GGUCCUA-GCGuc -5'
30991 3' -58.5 NC_006560.1 + 45740 0.67 0.735925
Target:  5'- cGCCGCgGGCUCGcgcCCCCgccagggguuggcguGGGGgggCGCGGg -3'
miRNA:   3'- -UGGUGgCUGAGU---GGGG---------------UCCUa--GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 30885 0.67 0.73207
Target:  5'- cCCACacccaGACccCGCCCCGGGcccaggCGCAGa -3'
miRNA:   3'- uGGUGg----CUGa-GUGGGGUCCua----GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 93780 0.67 0.73207
Target:  5'- uCCugCGGCgcugCgAUCCCAGGAUcggcCGCGGa -3'
miRNA:   3'- uGGugGCUGa---G-UGGGGUCCUA----GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 15341 0.67 0.73207
Target:  5'- cGCgGCCGGCgcgg-CCGGGGUCGCGGu -3'
miRNA:   3'- -UGgUGGCUGaguggGGUCCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 67953 0.67 0.73207
Target:  5'- cACCACCGccccccGCgaCGCCCCccgAGGA-CGCGGg -3'
miRNA:   3'- -UGGUGGC------UGa-GUGGGG---UCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 143007 0.67 0.73207
Target:  5'- aGCCACCGAgaCGCCCggCGGGAcagGUAGg -3'
miRNA:   3'- -UGGUGGCUgaGUGGG--GUCCUag-CGUC- -5'
30991 3' -58.5 NC_006560.1 + 635 0.67 0.731104
Target:  5'- gGCUcUCGGCUUccgcacgGCCCCAGGuUCGCAc -3'
miRNA:   3'- -UGGuGGCUGAG-------UGGGGUCCuAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 37146 0.68 0.726263
Target:  5'- cGCCgACCGACccUCGcgucccccacgccccCCCCGGGucaguUCGCGGg -3'
miRNA:   3'- -UGG-UGGCUG--AGU---------------GGGGUCCu----AGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 34258 0.68 0.722375
Target:  5'- cUCGCCc-CUCGCCCCGGGcguacCGCGGg -3'
miRNA:   3'- uGGUGGcuGAGUGGGGUCCua---GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 22937 0.68 0.722375
Target:  5'- gGCCGCCGGCgcgccCGCCCCGuguGGG-CGCc- -3'
miRNA:   3'- -UGGUGGCUGa----GUGGGGU---CCUaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 23329 0.68 0.722375
Target:  5'- cGCgGCCGGCgccgcgccgcCGCCCCGGGA-CGCc- -3'
miRNA:   3'- -UGgUGGCUGa---------GUGGGGUCCUaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 106760 0.68 0.722375
Target:  5'- gACCugCGGgaCGCCCUGGGc-CGCAGc -3'
miRNA:   3'- -UGGugGCUgaGUGGGGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 11154 0.68 0.722375
Target:  5'- gGCgGCgCGGCgagCGCgagaguUCCGGGAUCGCGGg -3'
miRNA:   3'- -UGgUG-GCUGa--GUG------GGGUCCUAGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.