miRNA display CGI


Results 41 - 60 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 14613 0.66 0.407455
Target:  5'- cGCUugGCgCGGCCCUCGGGccCGCGGGcGGc -3'
miRNA:   3'- cUGG--UG-GCUGGGGGCCCc-GCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 14789 0.67 0.391878
Target:  5'- cGGgCACgGGCUCCguCGGGGgGCucGGGGGc -3'
miRNA:   3'- -CUgGUGgCUGGGG--GCCCCgCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 14858 0.72 0.172428
Target:  5'- uGGCgGCCGGgCgCCgGGGGgGCGGGGa -3'
miRNA:   3'- -CUGgUGGCUgG-GGgCCCCgCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 15244 0.68 0.329469
Target:  5'- cGGCCggugcggucggggagGCgGACgCCgGGGGCGCGGucgcGGGa -3'
miRNA:   3'- -CUGG---------------UGgCUGgGGgCCCCGCGCC----CCC- -5'
30991 5' -67.8 NC_006560.1 + 15511 0.67 0.376694
Target:  5'- cGCCcCCGAgUCCCGGGGCcaGCcGGGu -3'
miRNA:   3'- cUGGuGGCUgGGGGCCCCG--CGcCCCc -5'
30991 5' -67.8 NC_006560.1 + 15550 0.68 0.312758
Target:  5'- cGGCCagGCCGACCaggaggcUCUGGGGgGCGGcGGa -3'
miRNA:   3'- -CUGG--UGGCUGG-------GGGCCCCgCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 15592 0.66 0.439741
Target:  5'- aGGCCAgguCCuggGGCCacaCGGGGUccaGCGGGGGc -3'
miRNA:   3'- -CUGGU---GG---CUGGgg-GCCCCG---CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 15685 0.66 0.423414
Target:  5'- cGGCCgggACCGAgCgCCacaGGGGCGCcgcaGGGGc -3'
miRNA:   3'- -CUGG---UGGCUgG-GGg--CCCCGCGc---CCCC- -5'
30991 5' -67.8 NC_006560.1 + 15725 0.69 0.293564
Target:  5'- gGGCCggcacgggGCCGGCaCgCCgGGGGCGCGcgcguccGGGGg -3'
miRNA:   3'- -CUGG--------UGGCUG-G-GGgCCCCGCGC-------CCCC- -5'
30991 5' -67.8 NC_006560.1 + 15845 0.66 0.420996
Target:  5'- -gUCGCCGACCaggaUcucguagucguacgCGGcGGCGUGGGGGc -3'
miRNA:   3'- cuGGUGGCUGGg---G--------------GCC-CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 16203 0.74 0.138777
Target:  5'- cGGCCACCGGCggagccgggCCCGcGGGCccggcaucgucgagGCGGGGGg -3'
miRNA:   3'- -CUGGUGGCUGg--------GGGC-CCCG--------------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 16284 0.94 0.004273
Target:  5'- aGACgGCCGACCCCUGGGGCGCGGcGGGg -3'
miRNA:   3'- -CUGgUGGCUGGGGGCCCCGCGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 17465 0.68 0.33289
Target:  5'- -uCCAgC-ACCUCCGGGGUGaguccgcCGGGGGg -3'
miRNA:   3'- cuGGUgGcUGGGGGCCCCGC-------GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 17670 0.67 0.354674
Target:  5'- cGGCCucgucCCgGGCgCCgUGGGGCcCGGGGGg -3'
miRNA:   3'- -CUGGu----GG-CUG-GGgGCCCCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 17715 0.7 0.244197
Target:  5'- cGGCCggaaaACCGACgCCCCGGGGCGgGuuauaaaaggucuccGGuGGg -3'
miRNA:   3'- -CUGG-----UGGCUG-GGGGCCCCGCgC---------------CC-CC- -5'
30991 5' -67.8 NC_006560.1 + 18873 0.68 0.340506
Target:  5'- gGGCCGCCGccccGCCCgCCGuGGGCgGCGGa-- -3'
miRNA:   3'- -CUGGUGGC----UGGG-GGC-CCCG-CGCCccc -5'
30991 5' -67.8 NC_006560.1 + 19555 0.66 0.423414
Target:  5'- -uCCGgCGGcCCCCCGGaGGCGgcacCGGGcGGc -3'
miRNA:   3'- cuGGUgGCU-GGGGGCC-CCGC----GCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 20045 0.66 0.448039
Target:  5'- cGCCcgucguuCCGAgCCaUCGGGGCGUuccgacGGGGGc -3'
miRNA:   3'- cUGGu------GGCUgGG-GGCCCCGCG------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 20117 0.69 0.287987
Target:  5'- gGACUccggaaaaaCGACCCCCGcGcGGCGguCGGGGGa -3'
miRNA:   3'- -CUGGug-------GCUGGGGGC-C-CCGC--GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 20519 0.66 0.420996
Target:  5'- --gCACCGGCgCCUGGagccguucagaaccGGCgaggGCGGGGGg -3'
miRNA:   3'- cugGUGGCUGgGGGCC--------------CCG----CGCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.