miRNA display CGI


Results 21 - 40 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 5088 0.74 0.130198
Target:  5'- cGugCGgCGcGCCgCCCGGGGUcgGCGGGGGc -3'
miRNA:   3'- -CugGUgGC-UGG-GGGCCCCG--CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 5130 0.74 0.138777
Target:  5'- uGACCcacACCGacucgcggcgcgggGCCCgggCCGGGGcCGCGGGGGc -3'
miRNA:   3'- -CUGG---UGGC--------------UGGG---GGCCCC-GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 5455 0.68 0.333577
Target:  5'- -uUCGCCG--CCCgGGGGCGCcGGGGc -3'
miRNA:   3'- cuGGUGGCugGGGgCCCCGCGcCCCC- -5'
30991 5' -67.8 NC_006560.1 + 5614 0.66 0.448039
Target:  5'- cGGCCGCCcGCCucauauacCCCGGccGGCGaCGGGcGGn -3'
miRNA:   3'- -CUGGUGGcUGG--------GGGCC--CCGC-GCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 5653 0.87 0.014407
Target:  5'- cGCCcgGCCGGCuccgCCCCGGGGCGCGGGGGc -3'
miRNA:   3'- cUGG--UGGCUG----GGGGCCCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 7270 0.69 0.293564
Target:  5'- cGCCGCCGACCCcggaccugccgCCGGcugcgaugacgacGGagugcCGCGGGGGc -3'
miRNA:   3'- cUGGUGGCUGGG-----------GGCC-------------CC-----GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 7482 0.78 0.063603
Target:  5'- cGCCACgCGACCCCCGGGGgUGaggacggcccccuccCGGGGGu -3'
miRNA:   3'- cUGGUG-GCUGGGGGCCCC-GC---------------GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 8903 0.73 0.151377
Target:  5'- gGGCCAcgcguggucugucuuCCGGCg--CGGGGCGCGGGGGg -3'
miRNA:   3'- -CUGGU---------------GGCUGgggGCCCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 9615 0.69 0.281889
Target:  5'- ---gGCgCGGCCCCUGGGGCcGCGccgaaGGGGu -3'
miRNA:   3'- cuggUG-GCUGGGGGCCCCG-CGC-----CCCC- -5'
30991 5' -67.8 NC_006560.1 + 9842 0.67 0.345417
Target:  5'- aGGCCGggcCUGGCCUCCauggcggcguccguGGGGCacCGGGGGg -3'
miRNA:   3'- -CUGGU---GGCUGGGGG--------------CCCCGc-GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 10470 0.7 0.231565
Target:  5'- gGGCCAC--GCCgCCuCGGGGCccgggGCGGGGGc -3'
miRNA:   3'- -CUGGUGgcUGG-GG-GCCCCG-----CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 10782 0.67 0.376694
Target:  5'- cGCCGCCaggaGCCCCCgcGGGGCcCGGGcGa -3'
miRNA:   3'- cUGGUGGc---UGGGGG--CCCCGcGCCC-Cc -5'
30991 5' -67.8 NC_006560.1 + 11246 0.74 0.136504
Target:  5'- cGCCGCuUGGCCCgaCGGGGCGacucCGGGGGu -3'
miRNA:   3'- cUGGUG-GCUGGGg-GCCCCGC----GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 11307 0.7 0.235191
Target:  5'- gGGCCGCCucguucacggccgaGAUgCUCGGGGCGaccggcgaGGGGGg -3'
miRNA:   3'- -CUGGUGG--------------CUGgGGGCCCCGCg-------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 11525 0.74 0.121241
Target:  5'- -gUCGcCCGACCCCCgccgGGGGuCGCGGGGu -3'
miRNA:   3'- cuGGU-GGCUGGGGG----CCCC-GCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 11577 0.74 0.136504
Target:  5'- cGACCuCCGccGCCUCgGGGGuCGCGGGGu -3'
miRNA:   3'- -CUGGuGGC--UGGGGgCCCC-GCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 11726 0.7 0.226466
Target:  5'- -uCgGCCGGCCCCa--GGCGCGGGGc -3'
miRNA:   3'- cuGgUGGCUGGGGgccCCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 11925 0.68 0.326752
Target:  5'- aGCCGCgGGCCCgCaggaGGGGC-CGGcGGGc -3'
miRNA:   3'- cUGGUGgCUGGG-Gg---CCCCGcGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 12333 0.73 0.157141
Target:  5'- gGACCGgaGGCaCCUCGGGGCugGCGGGGcGg -3'
miRNA:   3'- -CUGGUggCUG-GGGGCCCCG--CGCCCC-C- -5'
30991 5' -67.8 NC_006560.1 + 14396 0.69 0.269418
Target:  5'- cGACCgACCGAUucggaugaccgcaCCCCGGGGCGaggcguugucUGGGcGGc -3'
miRNA:   3'- -CUGG-UGGCUG-------------GGGGCCCCGC----------GCCC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.