miRNA display CGI


Results 21 - 40 of 306 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 147007 0.76 0.086557
Target:  5'- cGGCCGCgGGgCCaCCGGGGCcaCGGGGGg -3'
miRNA:   3'- -CUGGUGgCUgGG-GGCCCCGc-GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 35270 0.76 0.090861
Target:  5'- cGGCCGCCGcGCCgggcggcggggCCCGGGGUcCGGGGGc -3'
miRNA:   3'- -CUGGUGGC-UGG-----------GGGCCCCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 60637 0.76 0.090861
Target:  5'- uGCgGCUGGaccCCCCCGGGGCagacgcGCGGGGGc -3'
miRNA:   3'- cUGgUGGCU---GGGGGCCCCG------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 75137 0.76 0.090861
Target:  5'- cGGCCGCCGACCUggcggCGGcGGUGCGGcGGGa -3'
miRNA:   3'- -CUGGUGGCUGGGg----GCC-CCGCGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 137145 0.76 0.094678
Target:  5'- uGACCACCGAgCUCCUGgcgcucggggcggaGGGCGCGGaGGGc -3'
miRNA:   3'- -CUGGUGGCU-GGGGGC--------------CCCGCGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 103064 0.75 0.105023
Target:  5'- gGGCCGCCGGuuCCgCGGGGa-CGGGGGg -3'
miRNA:   3'- -CUGGUGGCUggGG-GCCCCgcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 99839 0.75 0.107318
Target:  5'- gGGCgGCCGggauccagagguaGCUCCCgucgccggGGGGCGCGGGGGu -3'
miRNA:   3'- -CUGgUGGC-------------UGGGGG--------CCCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 26857 0.75 0.108354
Target:  5'- cGGCCGCCGcCCCCCGGcgcccguGGCGggagagcgagaccgaCGGGGGc -3'
miRNA:   3'- -CUGGUGGCuGGGGGCC-------CCGC---------------GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 31789 0.75 0.109925
Target:  5'- cGCCACCccugGACCCCCGccgaGGGCgacccguagggacGCGGGGGu -3'
miRNA:   3'- cUGGUGG----CUGGGGGC----CCCG-------------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 67953 0.75 0.11259
Target:  5'- cACCACCGcCCCCCGcgacgccccccgaGGaCGCGGGGGc -3'
miRNA:   3'- cUGGUGGCuGGGGGC-------------CCcGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 100778 0.75 0.115315
Target:  5'- cGGCguCgGACCCCuCGGGGCaucggggccgucgGCGGGGGc -3'
miRNA:   3'- -CUGguGgCUGGGG-GCCCCG-------------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 26946 0.75 0.115591
Target:  5'- gGGCCGCgGAggccggggaaCCCCacaggCGGGGCGgGGGGGg -3'
miRNA:   3'- -CUGGUGgCU----------GGGG-----GCCCCGCgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 1204 0.75 0.118385
Target:  5'- gGACC-CCaGGCuCCCCGGGG-GCGGGGc -3'
miRNA:   3'- -CUGGuGG-CUG-GGGGCCCCgCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 118377 0.75 0.118385
Target:  5'- gGGCCuggaGCCCCCGGGGgGCGGGcGGu -3'
miRNA:   3'- -CUGGuggcUGGGGGCCCCgCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 27799 0.75 0.118385
Target:  5'- cGGCCGCCGuuCCUUCGGcGCGCGGGGc -3'
miRNA:   3'- -CUGGUGGCu-GGGGGCCcCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 11525 0.74 0.121241
Target:  5'- -gUCGcCCGACCCCCgccgGGGGuCGCGGGGu -3'
miRNA:   3'- cuGGU-GGCUGGGGG----CCCC-GCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 32554 0.74 0.127146
Target:  5'- uGCgGCCc-CCCCCaGGGGgGCGGGGGc -3'
miRNA:   3'- cUGgUGGcuGGGGG-CCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 64955 0.74 0.127146
Target:  5'- cGCCGCCGGcggccucguCCCCCucggcGGGGCcggccgccGCGGGGGg -3'
miRNA:   3'- cUGGUGGCU---------GGGGG-----CCCCG--------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 55308 0.74 0.130198
Target:  5'- cACCuGCUGGCCCaCGGGGuCGCGGGGcGg -3'
miRNA:   3'- cUGG-UGGCUGGGgGCCCC-GCGCCCC-C- -5'
30991 5' -67.8 NC_006560.1 + 149131 0.74 0.130198
Target:  5'- gGACCAUUGGCuCCgCCGcGGCGCGGGGcGg -3'
miRNA:   3'- -CUGGUGGCUG-GG-GGCcCCGCGCCCC-C- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.