miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 149751 1.08 0.000402
Target:  5'- cGACCACCGACCCCCGGGGCGCGGGGGc -3'
miRNA:   3'- -CUGGUGGCUGGGGGCCCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 16284 0.94 0.004273
Target:  5'- aGACgGCCGACCCCUGGGGCGCGGcGGGg -3'
miRNA:   3'- -CUGgUGGCUGGGGGCCCCGCGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 5653 0.87 0.014407
Target:  5'- cGCCcgGCCGGCuccgCCCCGGGGCGCGGGGGc -3'
miRNA:   3'- cUGG--UGGCUG----GGGGCCCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 131354 0.87 0.014775
Target:  5'- --gCGCCGACCCCCGGgacccccuGGCGCGGGGGg -3'
miRNA:   3'- cugGUGGCUGGGGGCC--------CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 68097 0.82 0.033863
Target:  5'- cGACCGa-GGCCCCgGGGGaCGCGGGGGa -3'
miRNA:   3'- -CUGGUggCUGGGGgCCCC-GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 4524 0.81 0.038364
Target:  5'- aGGCCGCCGuagagcacGCgCCCCGGGG-GCGGGGGc -3'
miRNA:   3'- -CUGGUGGC--------UG-GGGGCCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 35171 0.81 0.043343
Target:  5'- cGGCCGCCGggcccggggccccGCCCCgGGGGCGCcGGGGc -3'
miRNA:   3'- -CUGGUGGC-------------UGGGGgCCCCGCGcCCCC- -5'
30991 5' -67.8 NC_006560.1 + 139256 0.81 0.043885
Target:  5'- cGCC-CgGACCCCCGGgggcgcgcggucgucGGCGCGGGGGg -3'
miRNA:   3'- cUGGuGgCUGGGGGCC---------------CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 104763 0.8 0.044544
Target:  5'- uGGCCcCCG-CCCCgggcgGGGGCGCGGGGGg -3'
miRNA:   3'- -CUGGuGGCuGGGGg----CCCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 35347 0.8 0.045665
Target:  5'- cGCCcCCGGCCCCCGaGGcGCGCGcGGGGc -3'
miRNA:   3'- cUGGuGGCUGGGGGC-CC-CGCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 27358 0.79 0.054181
Target:  5'- cGCCGCCGAaccgcCCCgCCGGgaaacgcGGCGCGGGGGg -3'
miRNA:   3'- cUGGUGGCU-----GGG-GGCC-------CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 92679 0.79 0.058493
Target:  5'- cGGCC-UUGACCCCCGGGG-GCGGGGc -3'
miRNA:   3'- -CUGGuGGCUGGGGGCCCCgCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 7482 0.78 0.063603
Target:  5'- cGCCACgCGACCCCCGGGGgUGaggacggcccccuccCGGGGGu -3'
miRNA:   3'- cUGGUG-GCUGGGGGCCCC-GC---------------GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 102622 0.78 0.064549
Target:  5'- -uCCGCCGuCUCCCGGGGgagguuaaaCGCGGGGGc -3'
miRNA:   3'- cuGGUGGCuGGGGGCCCC---------GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 77095 0.78 0.066155
Target:  5'- cGCCGCCGcccGCgCCCacaGGGGCGCGGGcGGg -3'
miRNA:   3'- cUGGUGGC---UG-GGGg--CCCCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 32469 0.78 0.069483
Target:  5'- gGGCUGCgGGcuCCCCCGGGGCGCcagcaggaaGGGGGg -3'
miRNA:   3'- -CUGGUGgCU--GGGGGCCCCGCG---------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 72252 0.78 0.071207
Target:  5'- gGGCgGaggGACCCCCGGGaccGCGCGGGGGg -3'
miRNA:   3'- -CUGgUgg-CUGGGGGCCC---CGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 142755 0.77 0.080463
Target:  5'- cGCC-CgGGCCCCgGGGGCGCGGGa- -3'
miRNA:   3'- cUGGuGgCUGGGGgCCCCGCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 142512 0.77 0.084478
Target:  5'- gGGCC-CCGgcGCCCCCGGGGCGgGGccccGGGc -3'
miRNA:   3'- -CUGGuGGC--UGGGGGCCCCGCgCC----CCC- -5'
30991 5' -67.8 NC_006560.1 + 26481 0.77 0.084478
Target:  5'- cGGCCGgCGGCCCCggcggggggCGGGcGCGCGaGGGGg -3'
miRNA:   3'- -CUGGUgGCUGGGG---------GCCC-CGCGC-CCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.