miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 5 0.66 0.439741
Target:  5'- --gCGCCGcguuUCCCggCGGGGCgguucggcgGCGGGGGg -3'
miRNA:   3'- cugGUGGCu---GGGG--GCCCCG---------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 470 0.68 0.320031
Target:  5'- cGGCCAgucacccccgucCCGGCCCCCgucggucucGcucucccgccacGGGCGcCGGGGGg -3'
miRNA:   3'- -CUGGU------------GGCUGGGGG---------C------------CCCGC-GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 666 0.66 0.439741
Target:  5'- cACC-CCGGCgCgCCCGcGGCGCGGGc- -3'
miRNA:   3'- cUGGuGGCUG-G-GGGCcCCGCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 752 0.69 0.287987
Target:  5'- cGGCC-CCGuccccccCCCCCGcGGCGCGGGu- -3'
miRNA:   3'- -CUGGuGGCu------GGGGGCcCCGCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 904 0.7 0.23676
Target:  5'- gGGCCGCCGGCCgcuCCCGGcGGUGgaggccuaGGGGa -3'
miRNA:   3'- -CUGGUGGCUGG---GGGCC-CCGCg-------CCCCc -5'
30991 5' -67.8 NC_006560.1 + 971 0.68 0.322707
Target:  5'- aGGCCugC-ACgCCCgGGGGCGCGccccucgccccggccGGGGc -3'
miRNA:   3'- -CUGGugGcUG-GGGgCCCCGCGC---------------CCCC- -5'
30991 5' -67.8 NC_006560.1 + 1094 0.66 0.439741
Target:  5'- -cCCGCCaGGCuCCCCGGcGGCGCGa--- -3'
miRNA:   3'- cuGGUGG-CUG-GGGGCC-CCGCGCcccc -5'
30991 5' -67.8 NC_006560.1 + 1138 0.69 0.300493
Target:  5'- -uCCGgcCCGGCCUCCGGGGUuccugGCGGccGGGu -3'
miRNA:   3'- cuGGU--GGCUGGGGGCCCCG-----CGCC--CCC- -5'
30991 5' -67.8 NC_006560.1 + 1204 0.75 0.118385
Target:  5'- gGACC-CCaGGCuCCCCGGGG-GCGGGGc -3'
miRNA:   3'- -CUGGuGG-CUG-GGGGCCCCgCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 1518 0.68 0.333577
Target:  5'- cGugCAUCGGgCCCCGGGcGCGCGcccGGc -3'
miRNA:   3'- -CugGUGGCUgGGGGCCC-CGCGCc--CCc -5'
30991 5' -67.8 NC_006560.1 + 1924 0.72 0.178906
Target:  5'- cGGCCGCCGGcucgccguccggguCCCaguCCGGGGUcgcgccccccaggGCGGGGGc -3'
miRNA:   3'- -CUGGUGGCU--------------GGG---GGCCCCG-------------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 2048 0.66 0.399618
Target:  5'- cGGCCGgCGGCCCagcgcaCGcGcGGCGCGGcggcGGGg -3'
miRNA:   3'- -CUGGUgGCUGGGg-----GC-C-CCGCGCC----CCC- -5'
30991 5' -67.8 NC_006560.1 + 2451 0.68 0.326752
Target:  5'- uGCCGCCGcgGCCCaggcgcggCGGcGGCGCGucGGGGu -3'
miRNA:   3'- cUGGUGGC--UGGGg-------GCC-CCGCGC--CCCC- -5'
30991 5' -67.8 NC_006560.1 + 2900 0.66 0.397286
Target:  5'- aGGCCGCCG-CgCgCGGcgguccaggcgggcGGgGCGGGGGa -3'
miRNA:   3'- -CUGGUGGCuGgGgGCC--------------CCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 3275 0.72 0.176452
Target:  5'- aGCCGCCGcgggggucggGCCCgCCGGGcGgGCGGGcGGu -3'
miRNA:   3'- cUGGUGGC----------UGGG-GGCCC-CgCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 3318 0.72 0.18475
Target:  5'- cGCCGCgGGCCg--GGGGCGCGGGcGGg -3'
miRNA:   3'- cUGGUGgCUGGgggCCCCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 3653 0.68 0.320031
Target:  5'- cGGCC-UCGGCgCCgCCGGGGaCGCGGaGGu -3'
miRNA:   3'- -CUGGuGGCUG-GG-GGCCCC-GCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 4524 0.81 0.038364
Target:  5'- aGGCCGCCGuagagcacGCgCCCCGGGG-GCGGGGGc -3'
miRNA:   3'- -CUGGUGGC--------UG-GGGGCCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 4750 0.66 0.41459
Target:  5'- cGGCgG-CGGCCCgCGGcggcggcGGCGCGGGGu -3'
miRNA:   3'- -CUGgUgGCUGGGgGCC-------CCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 4979 0.66 0.423414
Target:  5'- cGCCuCCGAgCCggguccgagCCGGGG-GCGGGGu -3'
miRNA:   3'- cUGGuGGCUgGG---------GGCCCCgCGCCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.