miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 150325 0.66 0.415387
Target:  5'- cGGCCccccgcGCCGcguuUCCCggCGGGGCgguucggcgGCGGGGGg -3'
miRNA:   3'- -CUGG------UGGCu---GGGG--GCCCCG---------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 149861 0.67 0.375945
Target:  5'- aGACCcCCGgcACCCCCGGcacccccGGCcGCGGaaGGGc -3'
miRNA:   3'- -CUGGuGGC--UGGGGGCC-------CCG-CGCC--CCC- -5'
30991 5' -67.8 NC_006560.1 + 149832 0.71 0.211739
Target:  5'- cGGCCuCgCGGCCCCCGGc-CGCGGGcGGg -3'
miRNA:   3'- -CUGGuG-GCUGGGGGCCccGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 149751 1.08 0.000402
Target:  5'- cGACCACCGACCCCCGGGGCGCGGGGGc -3'
miRNA:   3'- -CUGGUGGCUGGGGGCCCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 149667 0.67 0.369252
Target:  5'- aGACCACCGACucaCCCCaGGacCGCaGGcGGGa -3'
miRNA:   3'- -CUGGUGGCUG---GGGGcCCc-GCG-CC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 149579 0.67 0.384236
Target:  5'- gGACCACCGACucaCCCCaGGacCGCaGGcGGGa -3'
miRNA:   3'- -CUGGUGGCUG---GGGGcCCc-GCG-CC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 149131 0.74 0.130198
Target:  5'- gGACCAUUGGCuCCgCCGcGGCGCGGGGcGg -3'
miRNA:   3'- -CUGGUGGCUG-GG-GGCcCCGCGCCCC-C- -5'
30991 5' -67.8 NC_006560.1 + 148653 0.67 0.369252
Target:  5'- cGGCCggagACgCGGCCCaaauaCGGGGCGCcguGGGcGGc -3'
miRNA:   3'- -CUGG----UG-GCUGGGg----GCCCCGCG---CCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 148371 0.66 0.437269
Target:  5'- aGGCCGCgCGaggGCUCCauggguccggggagCGGGGaCGCGGGGc -3'
miRNA:   3'- -CUGGUG-GC---UGGGG--------------GCCCC-GCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 147934 0.7 0.247443
Target:  5'- gGGCC-CgCGGCCCCCGGGaG-GCGGGcccGGg -3'
miRNA:   3'- -CUGGuG-GCUGGGGGCCC-CgCGCCC---CC- -5'
30991 5' -67.8 NC_006560.1 + 147895 0.74 0.136504
Target:  5'- aGACgGCgcaGACCUCgCGGGGCggggGCGGGGGa -3'
miRNA:   3'- -CUGgUGg--CUGGGG-GCCCCG----CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 147545 0.66 0.439741
Target:  5'- uGACgGgCUGGCCCaugCGGGcGgGCGGGGa -3'
miRNA:   3'- -CUGgU-GGCUGGGg--GCCC-CgCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 147271 0.68 0.326752
Target:  5'- -uCCuCUGGCggCCGGGGCcggGCGGGGGg -3'
miRNA:   3'- cuGGuGGCUGggGGCCCCG---CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 147187 0.73 0.143091
Target:  5'- -cCCGCCcccuCCCCCucccccgccGGaGGCGCGGGGGg -3'
miRNA:   3'- cuGGUGGcu--GGGGG---------CC-CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 147034 0.67 0.354674
Target:  5'- nGGCC-CCGAgaCggCCGGGGgGCGGcGGGg -3'
miRNA:   3'- -CUGGuGGCUggG--GGCCCCgCGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 147007 0.76 0.086557
Target:  5'- cGGCCGCgGGgCCaCCGGGGCcaCGGGGGg -3'
miRNA:   3'- -CUGGUGgCUgGG-GGCCCCGc-GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 146341 0.69 0.264211
Target:  5'- -uCC-UCGGCCCCCgcucGGcGGgGCGGGGGc -3'
miRNA:   3'- cuGGuGGCUGGGGG----CC-CCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 145277 0.66 0.451382
Target:  5'- cGGCCccCCGGCCCCCuGGGCGggccucggccccCacccuccgcccccgcGGGGGg -3'
miRNA:   3'- -CUGGu-GGCUGGGGGcCCCGC------------G---------------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 145247 0.68 0.313414
Target:  5'- -cCCGCa-GCCCCCGGcccCGUGGGGGa -3'
miRNA:   3'- cuGGUGgcUGGGGGCCcc-GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 145143 0.68 0.336336
Target:  5'- uGGCCcCCGcCCCCCuggggGGGGCcGCacuccccgccucccuGGGGGg -3'
miRNA:   3'- -CUGGuGGCuGGGGG-----CCCCG-CG---------------CCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.