miRNA display CGI


Results 21 - 40 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 25895 0.66 0.431532
Target:  5'- gGGCCGCgCG-CCUCCgauGGGGCGCGcgcacGGGc -3'
miRNA:   3'- -CUGGUG-GCuGGGGG---CCCCGCGCc----CCC- -5'
30991 5' -67.8 NC_006560.1 + 71967 0.66 0.431532
Target:  5'- gGGCuCGCCGGCCUUCGucgcgaaggugcGGGC-CGGGGa -3'
miRNA:   3'- -CUG-GUGGCUGGGGGC------------CCCGcGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 85242 0.66 0.431532
Target:  5'- --aCGCCGGCgCCCGcGGCGCGGa-- -3'
miRNA:   3'- cugGUGGCUGgGGGCcCCGCGCCccc -5'
30991 5' -67.8 NC_006560.1 + 131158 0.66 0.430716
Target:  5'- -cCCGCgCGGCUCUgGGcGGCggccgccGCGGGGGc -3'
miRNA:   3'- cuGGUG-GCUGGGGgCC-CCG-------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 29349 0.66 0.429087
Target:  5'- cGGCCuCgGAgCCCCGGGuCGCuccuccgcccagguGGGGGu -3'
miRNA:   3'- -CUGGuGgCUgGGGGCCCcGCG--------------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 75805 0.66 0.423414
Target:  5'- gGGCUGCUGGCCCUCucgcaGGC-CGGGGGc -3'
miRNA:   3'- -CUGGUGGCUGGGGGcc---CCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 19555 0.66 0.423414
Target:  5'- -uCCGgCGGcCCCCCGGaGGCGgcacCGGGcGGc -3'
miRNA:   3'- cuGGUgGCU-GGGGGCC-CCGC----GCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 30079 0.66 0.423414
Target:  5'- gGACgCACCGcCuCCCCGGGGagGCGGccccGGc -3'
miRNA:   3'- -CUG-GUGGCuG-GGGGCCCCg-CGCCc---CC- -5'
30991 5' -67.8 NC_006560.1 + 4979 0.66 0.423414
Target:  5'- cGCCuCCGAgCCggguccgagCCGGGG-GCGGGGu -3'
miRNA:   3'- cUGGuGGCUgGG---------GGCCCCgCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 15685 0.66 0.423414
Target:  5'- cGGCCgggACCGAgCgCCacaGGGGCGCcgcaGGGGc -3'
miRNA:   3'- -CUGG---UGGCUgG-GGg--CCCCGCGc---CCCC- -5'
30991 5' -67.8 NC_006560.1 + 31124 0.66 0.423414
Target:  5'- cGGgCGCCGggggcGCCUCCGGcuCGCGGGGa -3'
miRNA:   3'- -CUgGUGGC-----UGGGGGCCccGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 88870 0.66 0.423414
Target:  5'- cGCgGCCGugCCCCGGagacGGC-CGGGcgaGGg -3'
miRNA:   3'- cUGgUGGCugGGGGCC----CCGcGCCC---CC- -5'
30991 5' -67.8 NC_006560.1 + 123293 0.66 0.423414
Target:  5'- aGCCGCCG--CCCCGGGGUucCGGGa- -3'
miRNA:   3'- cUGGUGGCugGGGGCCCCGc-GCCCcc -5'
30991 5' -67.8 NC_006560.1 + 99148 0.66 0.422607
Target:  5'- -gUCGCCGGCCUcgCCGGGG-GCGGccgucccGGGc -3'
miRNA:   3'- cuGGUGGCUGGG--GGCCCCgCGCC-------CCC- -5'
30991 5' -67.8 NC_006560.1 + 15845 0.66 0.420996
Target:  5'- -gUCGCCGACCaggaUcucguagucguacgCGGcGGCGUGGGGGc -3'
miRNA:   3'- cuGGUGGCUGGg---G--------------GCC-CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 20519 0.66 0.420996
Target:  5'- --gCACCGGCgCCUGGagccguucagaaccGGCgaggGCGGGGGg -3'
miRNA:   3'- cugGUGGCUGgGGGCC--------------CCG----CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 150325 0.66 0.415387
Target:  5'- cGGCCccccgcGCCGcguuUCCCggCGGGGCgguucggcgGCGGGGGg -3'
miRNA:   3'- -CUGG------UGGCu---GGGG--GCCCCG---------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 131217 0.66 0.415387
Target:  5'- --gCGCCGGCCCgcgacgCCGGGGCuGCGGcugcuGGa -3'
miRNA:   3'- cugGUGGCUGGG------GGCCCCG-CGCCc----CC- -5'
30991 5' -67.8 NC_006560.1 + 47164 0.66 0.415387
Target:  5'- --gCGCCGAgCUCgCGaGGCGCGaGGGGg -3'
miRNA:   3'- cugGUGGCUgGGG-GCcCCGCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 33655 0.66 0.415387
Target:  5'- cGGCCGCgGGCCgcuuaggcgagCCCGgcGGGCgucuGCGGGGa -3'
miRNA:   3'- -CUGGUGgCUGG-----------GGGC--CCCG----CGCCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.