miRNA display CGI


Results 41 - 60 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 54929 0.66 0.41459
Target:  5'- gGGCCGgggCGGCCaucgUCGGGGCucgcgcgccggcgGCGGGGGa -3'
miRNA:   3'- -CUGGUg--GCUGGg---GGCCCCG-------------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 4750 0.66 0.41459
Target:  5'- cGGCgG-CGGCCCgCGGcggcggcGGCGCGGGGu -3'
miRNA:   3'- -CUGgUgGCUGGGgGCC-------CCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 96081 0.66 0.412998
Target:  5'- uGAUCGCCGcggccggacgagccGCCCCCGcGGCGgCGGcGGc -3'
miRNA:   3'- -CUGGUGGC--------------UGGGGGCcCCGC-GCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 66919 0.66 0.412998
Target:  5'- cGCCGCCGuCCgccgcggcccccgcCCCGGGGCGgGccuuGGGc -3'
miRNA:   3'- cUGGUGGCuGG--------------GGGCCCCGCgCc---CCC- -5'
30991 5' -67.8 NC_006560.1 + 122011 0.66 0.407455
Target:  5'- aGACgCugCGGCUgcaCCGGGaGgGCGuGGGGa -3'
miRNA:   3'- -CUG-GugGCUGGg--GGCCC-CgCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 14613 0.66 0.407455
Target:  5'- cGCUugGCgCGGCCCUCGGGccCGCGGGcGGc -3'
miRNA:   3'- cUGG--UG-GCUGGGGGCCCc-GCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 110437 0.66 0.407455
Target:  5'- gGGCCGCCGcCgCCCUGuGGGUGgCGGcGGc -3'
miRNA:   3'- -CUGGUGGCuG-GGGGC-CCCGC-GCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 139294 0.66 0.407455
Target:  5'- nGGgCACCggGugCCCCGugggcgccucGGGCGCGGGa- -3'
miRNA:   3'- -CUgGUGG--CugGGGGC----------CCCGCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 144236 0.66 0.407455
Target:  5'- -cCCGCCG-CCucuccuccugCCCGGGcccgcccgcguGCGCGGGGa -3'
miRNA:   3'- cuGGUGGCuGG----------GGGCCC-----------CGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 90438 0.66 0.407455
Target:  5'- cGCC-CCGggcaagGCCCCCaagGGGGgGCGGGa- -3'
miRNA:   3'- cUGGuGGC------UGGGGG---CCCCgCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 137203 0.66 0.407455
Target:  5'- -cCCGCCGGCggCCGGGGaGCGGGc- -3'
miRNA:   3'- cuGGUGGCUGggGGCCCCgCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 77004 0.66 0.406667
Target:  5'- cGCuCGCCGgggaccuGCCCCCGuGGGCGgucgacgaguucCGGGGc -3'
miRNA:   3'- cUG-GUGGC-------UGGGGGC-CCCGC------------GCCCCc -5'
30991 5' -67.8 NC_006560.1 + 124327 0.66 0.399618
Target:  5'- cGAgCGCC-ACCUCCGcGGGUugcuGCGGGGc -3'
miRNA:   3'- -CUgGUGGcUGGGGGC-CCCG----CGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 144786 0.66 0.399618
Target:  5'- uGCCcCuCGGCCCCCGGcGGCuaccccGCGGGc- -3'
miRNA:   3'- cUGGuG-GCUGGGGGCC-CCG------CGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 2048 0.66 0.399618
Target:  5'- cGGCCGgCGGCCCagcgcaCGcGcGGCGCGGcggcGGGg -3'
miRNA:   3'- -CUGGUgGCUGGGg-----GC-C-CCGCGCC----CCC- -5'
30991 5' -67.8 NC_006560.1 + 104245 0.66 0.399618
Target:  5'- -cCCGaCGACCCCCGGGaccaaccucguGCuCGGGGa -3'
miRNA:   3'- cuGGUgGCUGGGGGCCC-----------CGcGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 81423 0.66 0.39884
Target:  5'- cACCACCcgcgggccggggcGGCCCCgGucgcggcgucGGGCGCGGccGGGa -3'
miRNA:   3'- cUGGUGG-------------CUGGGGgC----------CCCGCGCC--CCC- -5'
30991 5' -67.8 NC_006560.1 + 2900 0.66 0.397286
Target:  5'- aGGCCGCCG-CgCgCGGcgguccaggcgggcGGgGCGGGGGa -3'
miRNA:   3'- -CUGGUGGCuGgGgGCC--------------CCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 134953 0.67 0.391878
Target:  5'- -cCCACCGACCCgCCGGGuccgcacuGCGCGa--- -3'
miRNA:   3'- cuGGUGGCUGGG-GGCCC--------CGCGCcccc -5'
30991 5' -67.8 NC_006560.1 + 57862 0.67 0.391878
Target:  5'- gGGCgGCaggGGCUCCCGGGGCcccccGCGGGu- -3'
miRNA:   3'- -CUGgUGg--CUGGGGGCCCCG-----CGCCCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.