miRNA display CGI


Results 1 - 20 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30992 3' -51.7 NC_006560.1 + 149075 1.12 0.004934
Target:  5'- cCCCGCGCUGAAUAAUUAACGGGGGCGg -3'
miRNA:   3'- -GGGCGCGACUUAUUAAUUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 12682 0.8 0.423571
Target:  5'- cCCCGCGCcGAcgauggcgcccguGUGGUcGGCGGGGGUGg -3'
miRNA:   3'- -GGGCGCGaCU-------------UAUUAaUUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 131751 0.8 0.442765
Target:  5'- gCCGUGCUGug-GAgccaGACGGGGGCGu -3'
miRNA:   3'- gGGCGCGACuuaUUaa--UUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 127579 0.78 0.540165
Target:  5'- gCUCGCGC-GGAUGcuguACGGGGGCGa -3'
miRNA:   3'- -GGGCGCGaCUUAUuaauUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 54650 0.78 0.540165
Target:  5'- -gCGCGCgGGAUGAggGucGCGGGGGCGc -3'
miRNA:   3'- ggGCGCGaCUUAUUaaU--UGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 27263 0.78 0.554434
Target:  5'- aCCCGCGCcGGccgcggccGCGGGGGCGg -3'
miRNA:   3'- -GGGCGCGaCUuauuaau-UGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 80855 0.76 0.633303
Target:  5'- gCUGCGCgcgGGcUGGgcGGCGGGGGCGg -3'
miRNA:   3'- gGGCGCGa--CUuAUUaaUUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 43683 0.74 0.746204
Target:  5'- gCCGCGCUGcccg---AGCGGGGcGCGc -3'
miRNA:   3'- gGGCGCGACuuauuaaUUGCCCC-CGC- -5'
30992 3' -51.7 NC_006560.1 + 85522 0.74 0.756036
Target:  5'- gCCCGCGggGGcgcuUGGggggGGCGGGGGCGc -3'
miRNA:   3'- -GGGCGCgaCUu---AUUaa--UUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 142350 0.74 0.764788
Target:  5'- cCCCGCGCgcgccucgggGGcCGGGGGCGg -3'
miRNA:   3'- -GGGCGCGacuuauuaa-UU-GCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 75963 0.74 0.769608
Target:  5'- gCCGCGCUGAGggcc-GACguccaccgggcgcugGGGGGCGu -3'
miRNA:   3'- gGGCGCGACUUauuaaUUG---------------CCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 35944 0.73 0.798731
Target:  5'- gCCGCGCgccaacgcgggcGCGGGGGCGg -3'
miRNA:   3'- gGGCGCGacuuauuaau--UGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 16089 0.73 0.803294
Target:  5'- cCCCGCcgucggucccGCUGAAccggcggAugGGGGGCGc -3'
miRNA:   3'- -GGGCG----------CGACUUauuaa--UugCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 9630 0.73 0.803294
Target:  5'- gCCGCGCcgaagGggUGGgugcggccgGAgGGGGGCGg -3'
miRNA:   3'- gGGCGCGa----CuuAUUaa-------UUgCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 5156 0.73 0.803294
Target:  5'- gCCCGgGCcGGGgcc---GCGGGGGCGg -3'
miRNA:   3'- -GGGCgCGaCUUauuaauUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 94963 0.73 0.815853
Target:  5'- gCCgCGUGCUGGcgcgcau-CGGGGGCGg -3'
miRNA:   3'- -GG-GCGCGACUuauuaauuGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 99359 0.72 0.829786
Target:  5'- gCCG-GCUGGgcGUAcuggGGCGGGGGCGc -3'
miRNA:   3'- gGGCgCGACU--UAUuaa-UUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 93197 0.72 0.829786
Target:  5'- cCUCGCGC-GAAUGGUaAGgGGGGGgGa -3'
miRNA:   3'- -GGGCGCGaCUUAUUAaUUgCCCCCgC- -5'
30992 3' -51.7 NC_006560.1 + 15046 0.72 0.833196
Target:  5'- aCUCGCGCcGGggggcgacggcgucgGUGGggGGCGGGGGCu -3'
miRNA:   3'- -GGGCGCGaCU---------------UAUUaaUUGCCCCCGc -5'
30992 3' -51.7 NC_006560.1 + 64047 0.72 0.833196
Target:  5'- uCCCGcCGCUGcgggccagGAUGGGGGCc -3'
miRNA:   3'- -GGGC-GCGACuuauuaa-UUGCCCCCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.