miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30992 3' -51.7 NC_006560.1 + 1 0.68 0.973839
Target:  5'- cCCCGCGCcgcguuucccggcgGGGcGGUUcggcGGCGGGGGgGg -3'
miRNA:   3'- -GGGCGCGa-------------CUUaUUAA----UUGCCCCCgC- -5'
30992 3' -51.7 NC_006560.1 + 1959 0.7 0.911709
Target:  5'- gUCGCGCcccccag--GGCGGGGGCGg -3'
miRNA:   3'- gGGCGCGacuuauuaaUUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 3411 0.66 0.989127
Target:  5'- -gCGCGCcGGcgGGcgGGCGGcGGGCGc -3'
miRNA:   3'- ggGCGCGaCUuaUUaaUUGCC-CCCGC- -5'
30992 3' -51.7 NC_006560.1 + 5094 0.68 0.969846
Target:  5'- -gCGCGCcGcccggGGUcGGCGGGGGCGc -3'
miRNA:   3'- ggGCGCGaCuua--UUAaUUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 5156 0.73 0.803294
Target:  5'- gCCCGgGCcGGGgcc---GCGGGGGCGg -3'
miRNA:   3'- -GGGCgCGaCUUauuaauUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 7289 0.7 0.933562
Target:  5'- gCCGCcgGCUGcGAUGAcgAcggagugccGCGGGGGCGu -3'
miRNA:   3'- gGGCG--CGAC-UUAUUaaU---------UGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 7477 0.69 0.954098
Target:  5'- cCCCGCGCcacgcgaccccCGGGGGUGa -3'
miRNA:   3'- -GGGCGCGacuuauuaauuGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 9630 0.73 0.803294
Target:  5'- gCCGCGCcgaagGggUGGgugcggccgGAgGGGGGCGg -3'
miRNA:   3'- gGGCGCGa----CuuAUUaa-------UUgCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 12412 0.67 0.984083
Target:  5'- cCCCGCGCgcggccgacgAACGGGGaacuGCGu -3'
miRNA:   3'- -GGGCGCGacuuauuaa-UUGCCCC----CGC- -5'
30992 3' -51.7 NC_006560.1 + 12682 0.8 0.423571
Target:  5'- cCCCGCGCcGAcgauggcgcccguGUGGUcGGCGGGGGUGg -3'
miRNA:   3'- -GGGCGCGaCU-------------UAUUAaUUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 14198 0.66 0.989127
Target:  5'- gCCCaGgGCgugGggUGGUcgGGCGGGGcGCc -3'
miRNA:   3'- -GGG-CgCGa--CuuAUUAa-UUGCCCC-CGc -5'
30992 3' -51.7 NC_006560.1 + 14539 0.69 0.938067
Target:  5'- cCCCGCGCcucccucccgggaGGGGGCGg -3'
miRNA:   3'- -GGGCGCGacuuauuaauug-CCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 15046 0.72 0.833196
Target:  5'- aCUCGCGCcGGggggcgacggcgucgGUGGggGGCGGGGGCu -3'
miRNA:   3'- -GGGCGCGaCU---------------UAUUaaUUGCCCCCGc -5'
30992 3' -51.7 NC_006560.1 + 16089 0.73 0.803294
Target:  5'- cCCCGCcgucggucccGCUGAAccggcggAugGGGGGCGc -3'
miRNA:   3'- -GGGCG----------CGACUUauuaa--UugCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 17099 0.7 0.932534
Target:  5'- aCCUGCGC-GAGgcuca---GGGGGCGg -3'
miRNA:   3'- -GGGCGCGaCUUauuaauugCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 18538 0.68 0.97274
Target:  5'- gCCCGCGCcuguaccaccugUGggUGGU---CGGGGcgGCGg -3'
miRNA:   3'- -GGGCGCG------------ACuuAUUAauuGCCCC--CGC- -5'
30992 3' -51.7 NC_006560.1 + 19206 0.69 0.957237
Target:  5'- gCCGgGUUGccaaaacaggaGACGGGGGCGg -3'
miRNA:   3'- gGGCgCGACuuauuaa----UUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 19730 0.71 0.877515
Target:  5'- gCUCGCGCgGG------GACGGGGGCa -3'
miRNA:   3'- -GGGCGCGaCUuauuaaUUGCCCCCGc -5'
30992 3' -51.7 NC_006560.1 + 20046 0.69 0.947802
Target:  5'- gCCCGuCGUUccgagccaucGGGgcGUUccGACGGGGGCGg -3'
miRNA:   3'- -GGGC-GCGA----------CUUauUAA--UUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 20665 0.68 0.963412
Target:  5'- uCCUGCGCgGAGg----GGCGcGGGCGg -3'
miRNA:   3'- -GGGCGCGaCUUauuaaUUGCcCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.