miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30992 3' -51.7 NC_006560.1 + 25785 0.66 0.989127
Target:  5'- gCCGCGUcGAucgGAgga--GGGGGCGc -3'
miRNA:   3'- gGGCGCGaCUua-UUaauugCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 25928 0.68 0.969846
Target:  5'- gCCGCGgaGGcGUGcgGUgccgGAgGGGGGCGa -3'
miRNA:   3'- gGGCGCgaCU-UAU--UAa---UUgCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 26095 0.69 0.947802
Target:  5'- gCCCgGCGCggcgGGGgcuuc-GCGGGGGCu -3'
miRNA:   3'- -GGG-CGCGa---CUUauuaauUGCCCCCGc -5'
30992 3' -51.7 NC_006560.1 + 26409 0.68 0.969545
Target:  5'- cCCCGgGCgUGcaggccuAGUGAagauCGGGGGCGg -3'
miRNA:   3'- -GGGCgCG-AC-------UUAUUaauuGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 26507 0.68 0.963412
Target:  5'- -gCGCGC-GAGgg---GGCGGGGGCc -3'
miRNA:   3'- ggGCGCGaCUUauuaaUUGCCCCCGc -5'
30992 3' -51.7 NC_006560.1 + 26615 0.72 0.846525
Target:  5'- aCCCGCGCcgcgGGGggGGggGACGGGGccGCGg -3'
miRNA:   3'- -GGGCGCGa---CUUa-UUaaUUGCCCC--CGC- -5'
30992 3' -51.7 NC_006560.1 + 26875 0.66 0.986043
Target:  5'- gCCCGUgGCgGGAgagcGAgaccGACGGGGGCc -3'
miRNA:   3'- -GGGCG-CGaCUUa---UUaa--UUGCCCCCGc -5'
30992 3' -51.7 NC_006560.1 + 27263 0.78 0.554434
Target:  5'- aCCCGCGCcGGccgcggccGCGGGGGCGg -3'
miRNA:   3'- -GGGCGCGaCUuauuaau-UGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 28391 0.66 0.990455
Target:  5'- gCCCGcCGUUGGuccgcgGGUUgGGCcGGGGCGg -3'
miRNA:   3'- -GGGC-GCGACUua----UUAA-UUGcCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 30503 0.69 0.948238
Target:  5'- cCCCGCGCcuccggcgGGGgagggggaGGGGGCGg -3'
miRNA:   3'- -GGGCGCGa-------CUUauuaauugCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 31844 0.67 0.977916
Target:  5'- gCCGCGCgacgcgcgGGGgggccGAgGGGGGCGc -3'
miRNA:   3'- gGGCGCGa-------CUUauuaaUUgCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 31941 0.71 0.868584
Target:  5'- gCgCGCGCgGGGggcggccgGGCGGGGGCGc -3'
miRNA:   3'- -GgGCGCGaCUUauuaa---UUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 32395 0.67 0.977916
Target:  5'- cCCCGCGggGGcgGAggg-UGGGGGCc -3'
miRNA:   3'- -GGGCGCgaCUuaUUaauuGCCCCCGc -5'
30992 3' -51.7 NC_006560.1 + 32588 0.66 0.987659
Target:  5'- cCCCGCag-GGAcacGGggGGCGGGGGCu -3'
miRNA:   3'- -GGGCGcgaCUUa--UUaaUUGCCCCCGc -5'
30992 3' -51.7 NC_006560.1 + 32907 0.67 0.984269
Target:  5'- gCCCGCG--GggUAGccgcCGGGGGCc -3'
miRNA:   3'- -GGGCGCgaCuuAUUaauuGCCCCCGc -5'
30992 3' -51.7 NC_006560.1 + 33384 0.71 0.891664
Target:  5'- gCCGCGgaGAGgggcgGGgaGAgGGGGGCGc -3'
miRNA:   3'- gGGCGCgaCUUa----UUaaUUgCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 33464 0.67 0.984269
Target:  5'- gCCCGgGCagGAGgagAGgcGGCGGGGGg- -3'
miRNA:   3'- -GGGCgCGa-CUUa--UUaaUUGCCCCCgc -5'
30992 3' -51.7 NC_006560.1 + 34169 0.67 0.980214
Target:  5'- gUCCGCGagaGAAg----GGCGGGGGgGa -3'
miRNA:   3'- -GGGCGCga-CUUauuaaUUGCCCCCgC- -5'
30992 3' -51.7 NC_006560.1 + 34269 0.71 0.900354
Target:  5'- cCCCGgGCguaccgcggGACGGGGGUGu -3'
miRNA:   3'- -GGGCgCGacuuauuaaUUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 34352 0.7 0.922829
Target:  5'- aCCGgGUUGGGgag--GAgGGGGGCGc -3'
miRNA:   3'- gGGCgCGACUUauuaaUUgCCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.