miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30992 3' -51.7 NC_006560.1 + 150330 0.68 0.973839
Target:  5'- cCCCGCGCcgcguuucccggcgGGGcGGUUcggcGGCGGGGGgGg -3'
miRNA:   3'- -GGGCGCGa-------------CUUaUUAA----UUGCCCCCgC- -5'
30992 3' -51.7 NC_006560.1 + 150000 0.66 0.986043
Target:  5'- gCCGCGCUcGGGacc---GCGGGcGGCGc -3'
miRNA:   3'- gGGCGCGA-CUUauuaauUGCCC-CCGC- -5'
30992 3' -51.7 NC_006560.1 + 149900 0.7 0.917088
Target:  5'- cCCCGCGCgccGAAggaacGGCGGccGGGCGc -3'
miRNA:   3'- -GGGCGCGa--CUUauuaaUUGCC--CCCGC- -5'
30992 3' -51.7 NC_006560.1 + 149075 1.12 0.004934
Target:  5'- cCCCGCGCUGAAUAAUUAACGGGGGCGg -3'
miRNA:   3'- -GGGCGCGACUUAUUAAUUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 148373 0.66 0.991653
Target:  5'- gCCGCGCgagggcuccaUGggUccGGggAGCGGGGacGCGg -3'
miRNA:   3'- gGGCGCG----------ACuuA--UUaaUUGCCCC--CGC- -5'
30992 3' -51.7 NC_006560.1 + 147897 0.7 0.908635
Target:  5'- aCgGCGCaGAccucgcggGGCGGGGGCGg -3'
miRNA:   3'- gGgCGCGaCUuauuaa--UUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 146774 0.67 0.981082
Target:  5'- gCCCGCGcCUGAGUcggggucugggucugGGUcuGCGccugggcccGGGGCGg -3'
miRNA:   3'- -GGGCGC-GACUUA---------------UUAauUGC---------CCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 145828 0.66 0.989127
Target:  5'- cCUCGCGC-GGcgGGc---CGGGGGCGc -3'
miRNA:   3'- -GGGCGCGaCUuaUUaauuGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 143438 0.66 0.990581
Target:  5'- uCCCGCGgUacgcccggGGCGaGGGGCGa -3'
miRNA:   3'- -GGGCGCgAcuuauuaaUUGC-CCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 142665 0.71 0.898385
Target:  5'- uUCCGgGCcGggUGAggGGCGGcGGCGg -3'
miRNA:   3'- -GGGCgCGaCuuAUUaaUUGCCcCCGC- -5'
30992 3' -51.7 NC_006560.1 + 142350 0.74 0.764788
Target:  5'- cCCCGCGCgcgccucgggGGcCGGGGGCGg -3'
miRNA:   3'- -GGGCGCGacuuauuaa-UU-GCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 142273 0.66 0.989127
Target:  5'- cCCCG-GCaaccgGGAUAAaaGGCGGcGGGCGc -3'
miRNA:   3'- -GGGCgCGa----CUUAUUaaUUGCC-CCCGC- -5'
30992 3' -51.7 NC_006560.1 + 142176 0.7 0.922829
Target:  5'- cCCCGCGCgGGccc--UAAUGGGaGGCGc -3'
miRNA:   3'- -GGGCGCGaCUuauuaAUUGCCC-CCGC- -5'
30992 3' -51.7 NC_006560.1 + 139979 0.67 0.977916
Target:  5'- -gCGCagGCUGGGggg--AGCGGGGGUGc -3'
miRNA:   3'- ggGCG--CGACUUauuaaUUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 139521 0.67 0.984269
Target:  5'- gCUGCgGCgauagcgagGGAcGGggGGCGGGGGCGg -3'
miRNA:   3'- gGGCG-CGa--------CUUaUUaaUUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 139063 0.68 0.966739
Target:  5'- gCCCGUGCcGGGcc-----CGGGGGCGc -3'
miRNA:   3'- -GGGCGCGaCUUauuaauuGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 138578 0.7 0.922829
Target:  5'- cCCCggcgaGCGCgGA------GACGGGGGCGg -3'
miRNA:   3'- -GGG-----CGCGaCUuauuaaUUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 136256 0.67 0.982329
Target:  5'- aCCCGUGCUGGucu----GCGuGGGCu -3'
miRNA:   3'- -GGGCGCGACUuauuaauUGCcCCCGc -5'
30992 3' -51.7 NC_006560.1 + 135981 0.7 0.911099
Target:  5'- aCCCgGCGCgcGGUGGcgGcCGGGGGCGg -3'
miRNA:   3'- -GGG-CGCGacUUAUUaaUuGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 135748 0.71 0.877515
Target:  5'- aCUGCGUgg------UGACGGGGGCGa -3'
miRNA:   3'- gGGCGCGacuuauuaAUUGCCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.