miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30992 3' -51.7 NC_006560.1 + 25785 0.66 0.989127
Target:  5'- gCCGCGUcGAucgGAgga--GGGGGCGc -3'
miRNA:   3'- gGGCGCGaCUua-UUaauugCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 118018 0.66 0.989127
Target:  5'- gCCGCGgcgcacCUGGcgGcggggcucGGCGGGGGCGg -3'
miRNA:   3'- gGGCGC------GACUuaUuaa-----UUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 145828 0.66 0.989127
Target:  5'- cCUCGCGC-GGcgGGc---CGGGGGCGc -3'
miRNA:   3'- -GGGCGCGaCUuaUUaauuGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 32588 0.66 0.987659
Target:  5'- cCCCGCag-GGAcacGGggGGCGGGGGCu -3'
miRNA:   3'- -GGGCGcgaCUUa--UUaaUUGCCCCCGc -5'
30992 3' -51.7 NC_006560.1 + 107237 0.66 0.987659
Target:  5'- gCCGCGacCUGGGgcucg--UGGGGGCGg -3'
miRNA:   3'- gGGCGC--GACUUauuaauuGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 110328 0.66 0.987659
Target:  5'- gCCGCGCaGGA-----GACGuuuGGGGCGg -3'
miRNA:   3'- gGGCGCGaCUUauuaaUUGC---CCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 117696 0.66 0.987659
Target:  5'- -aCGCGCUGGGggaGGUacUGGCGccugcggucccGGGGCGg -3'
miRNA:   3'- ggGCGCGACUUa--UUA--AUUGC-----------CCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 70599 0.66 0.987505
Target:  5'- gCCCGCGCcuccaagcugcUGGCGGGGGa- -3'
miRNA:   3'- -GGGCGCGacuuauua---AUUGCCCCCgc -5'
30992 3' -51.7 NC_006560.1 + 73164 0.66 0.98687
Target:  5'- gCCCGCaCgcacgccggcGCGGGGGCGg -3'
miRNA:   3'- -GGGCGcGacuuauuaauUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 68538 0.66 0.986544
Target:  5'- aCCCGCGCgccucGAGccccgccccgGGGGGCGc -3'
miRNA:   3'- -GGGCGCGa----CUUauuaauug--CCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 66048 0.66 0.986043
Target:  5'- gUCgGCGUUGc--GAUU--CGGGGGCGg -3'
miRNA:   3'- -GGgCGCGACuuaUUAAuuGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 76847 0.66 0.986043
Target:  5'- gCCaagaGCGCcGAGcg---GGCGGGGGCc -3'
miRNA:   3'- -GGg---CGCGaCUUauuaaUUGCCCCCGc -5'
30992 3' -51.7 NC_006560.1 + 150000 0.66 0.986043
Target:  5'- gCCGCGCUcGGGacc---GCGGGcGGCGc -3'
miRNA:   3'- gGGCGCGA-CUUauuaauUGCCC-CCGC- -5'
30992 3' -51.7 NC_006560.1 + 26875 0.66 0.986043
Target:  5'- gCCCGUgGCgGGAgagcGAgaccGACGGGGGCc -3'
miRNA:   3'- -GGGCG-CGaCUUa---UUaa--UUGCCCCCGc -5'
30992 3' -51.7 NC_006560.1 + 74040 0.66 0.985701
Target:  5'- aCCUGCuGCgGGAgcugcugcAGCGGGGGUGc -3'
miRNA:   3'- -GGGCG-CGaCUUauuaa---UUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 32907 0.67 0.984269
Target:  5'- gCCCGCG--GggUAGccgcCGGGGGCc -3'
miRNA:   3'- -GGGCGCgaCuuAUUaauuGCCCCCGc -5'
30992 3' -51.7 NC_006560.1 + 77199 0.67 0.984269
Target:  5'- gCCGCGCgccggaccugcGGAUGGUgcgcuGCcGGGGCGa -3'
miRNA:   3'- gGGCGCGa----------CUUAUUAau---UGcCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 66505 0.67 0.984269
Target:  5'- gCCCGCGCgccccGGUAGUUGGCGGuGacguGCGu -3'
miRNA:   3'- -GGGCGCGac---UUAUUAAUUGCC-Cc---CGC- -5'
30992 3' -51.7 NC_006560.1 + 40308 0.67 0.984269
Target:  5'- cCCCGCGCUug------GGCGGGcGCGg -3'
miRNA:   3'- -GGGCGCGAcuuauuaaUUGCCCcCGC- -5'
30992 3' -51.7 NC_006560.1 + 33464 0.67 0.984269
Target:  5'- gCCCGgGCagGAGgagAGgcGGCGGGGGg- -3'
miRNA:   3'- -GGGCgCGa-CUUa--UUaaUUGCCCCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.