miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30992 5' -50.1 NC_006560.1 + 149109 1.16 0.004541
Target:  5'- gGGCGUCCCCGUGAAUAAUUCAGGACCa -3'
miRNA:   3'- -CCGCAGGGGCACUUAUUAAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 140389 0.76 0.740037
Target:  5'- cGGuCGUCCCCGgGGggGGUUCAGcGCCg -3'
miRNA:   3'- -CC-GCAGGGGCaCUuaUUAAGUCcUGG- -5'
30992 5' -50.1 NC_006560.1 + 29501 0.76 0.740037
Target:  5'- cGCGUCCCCGccgGAGaGAggCGGGACg -3'
miRNA:   3'- cCGCAGGGGCa--CUUaUUaaGUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 6139 0.76 0.779193
Target:  5'- cGGCGUCCCCGguugccuagcaacgCAGGAUCg -3'
miRNA:   3'- -CCGCAGGGGCacuuauuaa-----GUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 21058 0.76 0.779193
Target:  5'- cGGCGUCCCCGgucgccuagcaacgCAGGAUCg -3'
miRNA:   3'- -CCGCAGGGGCacuuauuaa-----GUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 112078 0.74 0.833568
Target:  5'- cGGCuGUCCCUG-GAGcAGgcgaUCGGGACCg -3'
miRNA:   3'- -CCG-CAGGGGCaCUUaUUa---AGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 124361 0.72 0.920119
Target:  5'- cGGCGaCCCCuggacGUGGAgccccUCGGGGCCc -3'
miRNA:   3'- -CCGCaGGGG-----CACUUauua-AGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 105647 0.72 0.931159
Target:  5'- cGGCGcCCCCGUcGAc-----CGGGACCc -3'
miRNA:   3'- -CCGCaGGGGCA-CUuauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 32163 0.71 0.950223
Target:  5'- gGGCGUCCCCGgcgccGAGggcgggUCgAGGcCCg -3'
miRNA:   3'- -CCGCAGGGGCa----CUUauua--AG-UCCuGG- -5'
30992 5' -50.1 NC_006560.1 + 89035 0.71 0.954372
Target:  5'- cGCGUCCCCGgucgccuagcaacgCAGGAUCg -3'
miRNA:   3'- cCGCAGGGGCacuuauuaa-----GUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 68088 0.7 0.964725
Target:  5'- cGGCGUCCCCGaccGAGgccccggGGGACg -3'
miRNA:   3'- -CCGCAGGGGCa--CUUauuaag-UCCUGg -5'
30992 5' -50.1 NC_006560.1 + 14887 0.7 0.965727
Target:  5'- aGGuCGUUCCCGggcccgggUCGGGGCCc -3'
miRNA:   3'- -CC-GCAGGGGCacuuauuaAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 63141 0.7 0.967986
Target:  5'- gGGCGcgCCCCGUGcaggca-CAGGGCg -3'
miRNA:   3'- -CCGCa-GGGGCACuuauuaaGUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 42704 0.7 0.971028
Target:  5'- uGCGUCCggCCGUcucgcg-UCAGGGCCg -3'
miRNA:   3'- cCGCAGG--GGCAcuuauuaAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 22177 0.7 0.971611
Target:  5'- gGGCGcugUCCCCGccg-----UCGGGGCCg -3'
miRNA:   3'- -CCGC---AGGGGCacuuauuaAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 128314 0.69 0.974397
Target:  5'- gGGCGUCCCCccGGGgc---CGGGACg -3'
miRNA:   3'- -CCGCAGGGGcaCUUauuaaGUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 68398 0.69 0.974665
Target:  5'- cGCGUCCCCG-GAGgccacccgucugcugGAggcggCGGGACUg -3'
miRNA:   3'- cCGCAGGGGCaCUUa--------------UUaa---GUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 114074 0.69 0.976979
Target:  5'- cGCGcCCCCGUGAcgGAcaUgGGGAaCCu -3'
miRNA:   3'- cCGCaGGGGCACUuaUUa-AgUCCU-GG- -5'
30992 5' -50.1 NC_006560.1 + 81154 0.69 0.979365
Target:  5'- gGGUGUCgggCCgGUGGAacug-CGGGACCg -3'
miRNA:   3'- -CCGCAG---GGgCACUUauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 65186 0.69 0.979365
Target:  5'- cGGUGUCCCCGUcGAcgaccAUGGcgCAGugcGACCc -3'
miRNA:   3'- -CCGCAGGGGCA-CU-----UAUUaaGUC---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.