miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30992 5' -50.1 NC_006560.1 + 1211 0.69 0.983579
Target:  5'- aGGC-UCCCCG-GGGg----CGGGGCCc -3'
miRNA:   3'- -CCGcAGGGGCaCUUauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 5344 0.67 0.99239
Target:  5'- cGGCGUCCUCGgcgGGccGUcGUcCGGGuCCg -3'
miRNA:   3'- -CCGCAGGGGCa--CU--UAuUAaGUCCuGG- -5'
30992 5' -50.1 NC_006560.1 + 6139 0.76 0.779193
Target:  5'- cGGCGUCCCCGguugccuagcaacgCAGGAUCg -3'
miRNA:   3'- -CCGCAGGGGCacuuauuaa-----GUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 10127 0.66 0.996946
Target:  5'- cGGUGUCCCCcG-GGcUAAa-CAGGAUCg -3'
miRNA:   3'- -CCGCAGGGG-CaCUuAUUaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 12696 0.66 0.996946
Target:  5'- uGGCGcCCgUGUGGucggcggggGUGGgggCGGGGCCc -3'
miRNA:   3'- -CCGCaGGgGCACU---------UAUUaa-GUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 13586 0.67 0.995786
Target:  5'- gGGgGcCCCCGcgGAAgcgaUCGGGGCUc -3'
miRNA:   3'- -CCgCaGGGGCa-CUUauuaAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 14887 0.7 0.965727
Target:  5'- aGGuCGUUCCCGggcccgggUCGGGGCCc -3'
miRNA:   3'- -CC-GCAGGGGCacuuauuaAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 15164 0.67 0.994289
Target:  5'- cGGCGUCUUCGcGG-----UCGGGAUCa -3'
miRNA:   3'- -CCGCAGGGGCaCUuauuaAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 15767 0.66 0.998182
Target:  5'- gGGCGaCUCCGggcccgGGGgccggCAGGGCCc -3'
miRNA:   3'- -CCGCaGGGGCa-----CUUauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 16871 0.66 0.998182
Target:  5'- cGgGUCCCCGgc-------CAGGACCu -3'
miRNA:   3'- cCgCAGGGGCacuuauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 16963 0.66 0.997462
Target:  5'- aGGCG-CCCCGaagucccccaggcaGAUGuccUCGGGGCCg -3'
miRNA:   3'- -CCGCaGGGGCac------------UUAUua-AGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 20900 0.68 0.988041
Target:  5'- cGGCGUUCCCGggcggugggcgcgGAGcGAgg-AGGGCCg -3'
miRNA:   3'- -CCGCAGGGGCa------------CUUaUUaagUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 21058 0.76 0.779193
Target:  5'- cGGCGUCCCCGgucgccuagcaacgCAGGAUCg -3'
miRNA:   3'- -CCGCAGGGGCacuuauuaa-----GUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 22177 0.7 0.971611
Target:  5'- gGGCGcugUCCCCGccg-----UCGGGGCCg -3'
miRNA:   3'- -CCGC---AGGGGCacuuauuaAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 29059 0.67 0.993943
Target:  5'- cGCGUCUCCGgccgg----CGGGGCCc -3'
miRNA:   3'- cCGCAGGGGCacuuauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 29501 0.76 0.740037
Target:  5'- cGCGUCCCCGccgGAGaGAggCGGGACg -3'
miRNA:   3'- cCGCAGGGGCa--CUUaUUaaGUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 31668 0.66 0.998182
Target:  5'- cGUGUCCCCGcccGAGUAcc-CGGGAgaccCCg -3'
miRNA:   3'- cCGCAGGGGCa--CUUAUuaaGUCCU----GG- -5'
30992 5' -50.1 NC_006560.1 + 32163 0.71 0.950223
Target:  5'- gGGCGUCCCCGgcgccGAGggcgggUCgAGGcCCg -3'
miRNA:   3'- -CCGCAGGGGCa----CUUauua--AG-UCCuGG- -5'
30992 5' -50.1 NC_006560.1 + 32850 0.68 0.985424
Target:  5'- cGGCGggcagccCCCCGggcaGAGgggg-CAGGGCCc -3'
miRNA:   3'- -CCGCa------GGGGCa---CUUauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 34703 0.69 0.981562
Target:  5'- gGGCGUCUCgGUGGcucucUCGGG-CCg -3'
miRNA:   3'- -CCGCAGGGgCACUuauuaAGUCCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.