miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30993 3' -55.1 NC_006560.1 + 40118 0.67 0.909899
Target:  5'- cGGAGAcucGCGUcguccaucUGCAUGcGGAgccCCGCCCc -3'
miRNA:   3'- -CCUCU---CGUAa-------ACGUACcCCU---GGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 147030 0.67 0.908682
Target:  5'- cGGGGGGCcccgagacgGCcgGGGGGCgGCg- -3'
miRNA:   3'- -CCUCUCGuaaa-----CGuaCCCCUGgCGgg -5'
30993 3' -55.1 NC_006560.1 + 18096 0.67 0.90807
Target:  5'- aGAGAGCGggcggucgcggcguUcUGCGUccGGGGCCGCgCCg -3'
miRNA:   3'- cCUCUCGU--------------AaACGUAc-CCCUGGCG-GG- -5'
30993 3' -55.1 NC_006560.1 + 14189 0.67 0.903721
Target:  5'- uGGAGAaacGCccaggGCGUGGGGuggucgggcggGgCGCCCg -3'
miRNA:   3'- -CCUCU---CGuaaa-CGUACCCC-----------UgGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 15872 0.67 0.903721
Target:  5'- ----cGCGgcgGCGUGGGGGCCGgcgaCCg -3'
miRNA:   3'- ccucuCGUaaaCGUACCCCUGGCg---GG- -5'
30993 3' -55.1 NC_006560.1 + 45249 0.67 0.903721
Target:  5'- gGGGGGGCGUcuguggcgcgUGCG-GGGGAggUGCCCc -3'
miRNA:   3'- -CCUCUCGUAa---------ACGUaCCCCUg-GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 82804 0.67 0.903721
Target:  5'- cGGGAGgGg--GCGgaGGGGacgcGCCGCCCc -3'
miRNA:   3'- cCUCUCgUaaaCGUa-CCCC----UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 20949 0.67 0.903721
Target:  5'- cGAcGGCGUUUGC--GGcGGGCCGgCCg -3'
miRNA:   3'- cCUcUCGUAAACGuaCC-CCUGGCgGG- -5'
30993 3' -55.1 NC_006560.1 + 11100 0.67 0.8999
Target:  5'- gGGGGGGCGgaggaggGCGggggggGGGGGCUcagcgggcgucgaggGCCCc -3'
miRNA:   3'- -CCUCUCGUaaa----CGUa-----CCCCUGG---------------CGGG- -5'
30993 3' -55.1 NC_006560.1 + 26003 0.67 0.897306
Target:  5'- gGGAgGGGCGccgUGCGggccgcgGGGGACCcGCgCg -3'
miRNA:   3'- -CCU-CUCGUaa-ACGUa------CCCCUGG-CGgG- -5'
30993 3' -55.1 NC_006560.1 + 8585 0.67 0.897306
Target:  5'- cGGAGGGCcauccaGCAcacgaGGGcccccaGGCCGCCCg -3'
miRNA:   3'- -CCUCUCGuaaa--CGUa----CCC------CUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 81857 0.67 0.897306
Target:  5'- aGGuacGGGU---UGCA-GGGGAcguCCGCCCa -3'
miRNA:   3'- -CCu--CUCGuaaACGUaCCCCU---GGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 107329 0.67 0.890659
Target:  5'- -cAGcAGCAgcugGCcgGGGGcCCGCUCg -3'
miRNA:   3'- ccUC-UCGUaaa-CGuaCCCCuGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 32352 0.67 0.890659
Target:  5'- cGGGGGGCAgagggccccGCAgggacacgGGGGGCagaggGCCCc -3'
miRNA:   3'- -CCUCUCGUaaa------CGUa-------CCCCUGg----CGGG- -5'
30993 3' -55.1 NC_006560.1 + 32792 0.67 0.890659
Target:  5'- gGGAGGGgGgg-GCcgGGGGcGCgGCCg -3'
miRNA:   3'- -CCUCUCgUaaaCGuaCCCC-UGgCGGg -5'
30993 3' -55.1 NC_006560.1 + 135384 0.67 0.890659
Target:  5'- gGGGGGGCGgagGCcgcGGGGGugUCGCUCg -3'
miRNA:   3'- -CCUCUCGUaaaCGua-CCCCU--GGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 70316 0.67 0.890659
Target:  5'- cGGGGAGCGcgUGUacgccgugGUcGGGGAggcccccgaCCGCCUg -3'
miRNA:   3'- -CCUCUCGUaaACG--------UA-CCCCU---------GGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 9605 0.67 0.889982
Target:  5'- cGGAGcGCGgg-GCGcggccccUGGGG-CCGCgCCg -3'
miRNA:   3'- -CCUCuCGUaaaCGU-------ACCCCuGGCG-GG- -5'
30993 3' -55.1 NC_006560.1 + 140482 0.67 0.883783
Target:  5'- gGGGGGGCGgagGagGUGGGGGCgGCg- -3'
miRNA:   3'- -CCUCUCGUaaaCg-UACCCCUGgCGgg -5'
30993 3' -55.1 NC_006560.1 + 127282 0.67 0.883783
Target:  5'- -cGGGGCGUccaggUGCG-GGGGugCGgCCa -3'
miRNA:   3'- ccUCUCGUAa----ACGUaCCCCugGCgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.