miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30993 3' -55.1 NC_006560.1 + 150370 0.66 0.937195
Target:  5'- gGGGGuGCGUUUGg--GGGGGCgCGUUUg -3'
miRNA:   3'- -CCUCuCGUAAACguaCCCCUG-GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 106231 0.66 0.937195
Target:  5'- cGGGcucGCGUU--CGUGGaGACCGCCCg -3'
miRNA:   3'- cCUCu--CGUAAacGUACCcCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 74415 0.66 0.934237
Target:  5'- cGGAcGAGCugucgcccgagGCGc-GGGACCGCCUc -3'
miRNA:   3'- -CCU-CUCGuaaa-------CGUacCCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 140508 0.66 0.932217
Target:  5'- gGGGGAGaagg-GC-UGcGGGGCCGCUUc -3'
miRNA:   3'- -CCUCUCguaaaCGuAC-CCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 139328 0.66 0.932217
Target:  5'- gGGAGAgGCGggcgccucgGCGgcccgcgcggGGGGGCCGUCg -3'
miRNA:   3'- -CCUCU-CGUaaa------CGUa---------CCCCUGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 118391 0.66 0.926999
Target:  5'- cGGGGGGCGg--GCGguucGGGcCCGaCCCc -3'
miRNA:   3'- -CCUCUCGUaaaCGUac--CCCuGGC-GGG- -5'
30993 3' -55.1 NC_006560.1 + 148676 0.66 0.926999
Target:  5'- cGGGGcGCcgUggGCGgccccGGGGCCGCCg -3'
miRNA:   3'- -CCUCuCGuaAa-CGUac---CCCUGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 22849 0.66 0.926999
Target:  5'- cGGGGcGCGUgcucuacgGCGgccUGGGcGacaGCCGCCCg -3'
miRNA:   3'- -CCUCuCGUAaa------CGU---ACCC-C---UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 11350 0.66 0.926999
Target:  5'- gGGGGGGCGguagaUGCGggccGGGugCGgCCg -3'
miRNA:   3'- -CCUCUCGUaa---ACGUac--CCCugGCgGG- -5'
30993 3' -55.1 NC_006560.1 + 112520 0.66 0.92154
Target:  5'- -uGGAGCuca-GCGUGGGGcggcacgugcuGgCGCCCg -3'
miRNA:   3'- ccUCUCGuaaaCGUACCCC-----------UgGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 147786 0.66 0.92154
Target:  5'- aGGGGGCAgcugUUGCGcaUGGGGA--GCCa -3'
miRNA:   3'- cCUCUCGUa---AACGU--ACCCCUggCGGg -5'
30993 3' -55.1 NC_006560.1 + 68927 0.66 0.92154
Target:  5'- aGGAGGuGC----GCGUGucGGCCGCCCu -3'
miRNA:   3'- -CCUCU-CGuaaaCGUACccCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 76850 0.66 0.92154
Target:  5'- -aAGAGCGccgaGCGggcGGGGGCCGUCg -3'
miRNA:   3'- ccUCUCGUaaa-CGUa--CCCCUGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 126056 0.66 0.92154
Target:  5'- cGGGGGCGaugugGCAUuuucccgggaGGGGgguguucuacuACCGCCCg -3'
miRNA:   3'- cCUCUCGUaaa--CGUA----------CCCC-----------UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 137114 0.66 0.915839
Target:  5'- cGGGcccGGGCGUacgagcGCAUGGGGGCCcugaCCa -3'
miRNA:   3'- -CCU---CUCGUAaa----CGUACCCCUGGcg--GG- -5'
30993 3' -55.1 NC_006560.1 + 65318 0.66 0.915839
Target:  5'- gGGGGuGGCGaaucaGgGUGGGGGCCgGCUCg -3'
miRNA:   3'- -CCUC-UCGUaaa--CgUACCCCUGG-CGGG- -5'
30993 3' -55.1 NC_006560.1 + 26665 0.66 0.915839
Target:  5'- gGGGGGGaCGgggccGCGgggGGGGACgggGCCCg -3'
miRNA:   3'- -CCUCUC-GUaaa--CGUa--CCCCUGg--CGGG- -5'
30993 3' -55.1 NC_006560.1 + 73330 0.66 0.915839
Target:  5'- aGGAGGGCucggGCGUc--GGCCGCCUg -3'
miRNA:   3'- -CCUCUCGuaaaCGUAcccCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 2922 0.66 0.915839
Target:  5'- aGGcGGGCGgg-GCG-GGGGagacGCCGCCg -3'
miRNA:   3'- -CCuCUCGUaaaCGUaCCCC----UGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 40118 0.67 0.909899
Target:  5'- cGGAGAcucGCGUcguccaucUGCAUGcGGAgccCCGCCCc -3'
miRNA:   3'- -CCUCU---CGUAa-------ACGUACcCCU---GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.