miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30993 3' -55.1 NC_006560.1 + 16119 0.66 0.937195
Target:  5'- uGGGGGGCGcgaGCA-GGGccaGGCCGCaCCc -3'
miRNA:   3'- -CCUCUCGUaaaCGUaCCC---CUGGCG-GG- -5'
30993 3' -55.1 NC_006560.1 + 16377 0.7 0.785433
Target:  5'- gGGGGGGCAUggcgGCGcgGGcGGGCguCGCCUg -3'
miRNA:   3'- -CCUCUCGUAaa--CGUa-CC-CCUG--GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 17170 0.68 0.876682
Target:  5'- cGGGAGCAccagGCAcGuGaGGCCGCCCa -3'
miRNA:   3'- cCUCUCGUaaa-CGUaCcC-CUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 18096 0.67 0.90807
Target:  5'- aGAGAGCGggcggucgcggcguUcUGCGUccGGGGCCGCgCCg -3'
miRNA:   3'- cCUCUCGU--------------AaACGUAc-CCCUGGCG-GG- -5'
30993 3' -55.1 NC_006560.1 + 20549 0.69 0.79459
Target:  5'- cGAGGGCGggggGC-UGGGGuuCGCCg -3'
miRNA:   3'- cCUCUCGUaaa-CGuACCCCugGCGGg -5'
30993 3' -55.1 NC_006560.1 + 20949 0.67 0.903721
Target:  5'- cGAcGGCGUUUGC--GGcGGGCCGgCCg -3'
miRNA:   3'- cCUcUCGUAAACGuaCC-CCUGGCgGG- -5'
30993 3' -55.1 NC_006560.1 + 21001 0.68 0.861824
Target:  5'- gGGaAGGGCGgg-GCGgcGGGcCCGCCCc -3'
miRNA:   3'- -CC-UCUCGUaaaCGUacCCCuGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 22849 0.66 0.926999
Target:  5'- cGGGGcGCGUgcucuacgGCGgccUGGGcGacaGCCGCCCg -3'
miRNA:   3'- -CCUCuCGUAaa------CGU---ACCC-C---UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 25832 0.71 0.717955
Target:  5'- gGGAGAGgGgacgGCGUGGccGGGCgcgCGCCCg -3'
miRNA:   3'- -CCUCUCgUaaa-CGUACC--CCUG---GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 26003 0.67 0.897306
Target:  5'- gGGAgGGGCGccgUGCGggccgcgGGGGACCcGCgCg -3'
miRNA:   3'- -CCU-CUCGUaa-ACGUa------CCCCUGG-CGgG- -5'
30993 3' -55.1 NC_006560.1 + 26140 0.71 0.70694
Target:  5'- -cGGGGC---UGCGUGGGGGcgcggcaggggccCCGCCCc -3'
miRNA:   3'- ccUCUCGuaaACGUACCCCU-------------GGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 26255 0.66 0.937195
Target:  5'- cGGAGGGgGgc-GCGUcgcGGGGcucgcGCCGCCg -3'
miRNA:   3'- -CCUCUCgUaaaCGUA---CCCC-----UGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 26352 0.66 0.937195
Target:  5'- gGGAGGGCGgagacgGCggGGcGGAgacggCGCCCc -3'
miRNA:   3'- -CCUCUCGUaaa---CGuaCC-CCUg----GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 26497 0.66 0.941932
Target:  5'- cGGGGGGCGggcGCGcgagggggcGGGGGCCGUg- -3'
miRNA:   3'- -CCUCUCGUaaaCGUa--------CCCCUGGCGgg -5'
30993 3' -55.1 NC_006560.1 + 26665 0.66 0.915839
Target:  5'- gGGGGGGaCGgggccGCGgggGGGGACgggGCCCg -3'
miRNA:   3'- -CCUCUC-GUaaa--CGUa--CCCCUGg--CGGG- -5'
30993 3' -55.1 NC_006560.1 + 26884 0.68 0.849333
Target:  5'- gGGAGAGCGagaccgacggggGCcgggacgGGGGugacugGCCGCCCg -3'
miRNA:   3'- -CCUCUCGUaaa---------CGua-----CCCC------UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 27073 0.69 0.807159
Target:  5'- cGGGGcugcGCGUUgcgGCcUGGGGACCGaagcgggccucgcgaCCCg -3'
miRNA:   3'- -CCUCu---CGUAAa--CGuACCCCUGGC---------------GGG- -5'
30993 3' -55.1 NC_006560.1 + 27289 0.74 0.564965
Target:  5'- cGGGGcGCGgg-GCGcGGGGAgggcCCGCCCg -3'
miRNA:   3'- -CCUCuCGUaaaCGUaCCCCU----GGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 27839 0.74 0.564965
Target:  5'- gGGGGuGCcgggggUGCcgGGGGucucCCGCCCg -3'
miRNA:   3'- -CCUCuCGuaa---ACGuaCCCCu---GGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 28214 0.72 0.636562
Target:  5'- cGGGGAGCGUcgGCccGGGccgccGGCCGUCUg -3'
miRNA:   3'- -CCUCUCGUAaaCGuaCCC-----CUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.