miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30993 3' -55.1 NC_006560.1 + 131657 0.72 0.633478
Target:  5'- uGGAGGGCGUcgccggcgaggcccUgGCGggcgGGGGGCUGCuCCg -3'
miRNA:   3'- -CCUCUCGUA--------------AaCGUa---CCCCUGGCG-GG- -5'
30993 3' -55.1 NC_006560.1 + 58334 0.72 0.636562
Target:  5'- cGAGAGCGcgcGCuuggaggGGGGGCgCGCCCc -3'
miRNA:   3'- cCUCUCGUaaaCGua-----CCCCUG-GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 28214 0.72 0.636562
Target:  5'- cGGGGAGCGUcgGCccGGGccgccGGCCGUCUg -3'
miRNA:   3'- -CCUCUCGUAaaCGuaCCC-----CUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 29071 0.72 0.646838
Target:  5'- cGGcGGGGCccgccCGUcGGGGACCGCCCc -3'
miRNA:   3'- -CC-UCUCGuaaacGUA-CCCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 67148 0.72 0.657102
Target:  5'- gGGGGGGCGgggugGgGUGGGGAgaCGCCg -3'
miRNA:   3'- -CCUCUCGUaaa--CgUACCCCUg-GCGGg -5'
30993 3' -55.1 NC_006560.1 + 34544 0.72 0.657102
Target:  5'- gGGGGAuGUGUgUGCggGGGGGCgGCCg -3'
miRNA:   3'- -CCUCU-CGUAaACGuaCCCCUGgCGGg -5'
30993 3' -55.1 NC_006560.1 + 53693 0.72 0.657102
Target:  5'- cGGcGAGCAcgUacuacacgcGCAUGGacGGGCCGCCCc -3'
miRNA:   3'- -CCuCUCGUaaA---------CGUACC--CCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 103042 0.72 0.657102
Target:  5'- cGGGGcGCGg--GCGgccgcucGGGGGCCGCCg -3'
miRNA:   3'- -CCUCuCGUaaaCGUa------CCCCUGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 12797 0.72 0.657102
Target:  5'- gGGAGGGaccCGUcgGCc-GGGGGCCGCUCg -3'
miRNA:   3'- -CCUCUC---GUAaaCGuaCCCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 71646 0.72 0.657102
Target:  5'- uGGAGGGCGgg-GCGUGGacgcGGGCCucggccggcggcGCCCc -3'
miRNA:   3'- -CCUCUCGUaaaCGUACC----CCUGG------------CGGG- -5'
30993 3' -55.1 NC_006560.1 + 66335 0.72 0.667346
Target:  5'- cGGuGuGCGcg-GCcucGUGGGGGCCGCCg -3'
miRNA:   3'- -CCuCuCGUaaaCG---UACCCCUGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 44746 0.72 0.667346
Target:  5'- cGGAGAGCGacgUUGuCAUGGaGGACgUGgCCa -3'
miRNA:   3'- -CCUCUCGUa--AAC-GUACC-CCUG-GCgGG- -5'
30993 3' -55.1 NC_006560.1 + 74048 0.72 0.667346
Target:  5'- cGGGAGCugcUGCAgcgGGGGugCGaCCUg -3'
miRNA:   3'- cCUCUCGuaaACGUa--CCCCugGC-GGG- -5'
30993 3' -55.1 NC_006560.1 + 53612 0.72 0.669391
Target:  5'- gGGAGAGCGUcgacucccucgGCGcccUGcggcggcucguugccGGGGCCGCCCg -3'
miRNA:   3'- -CCUCUCGUAaa---------CGU---AC---------------CCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 128283 0.72 0.677561
Target:  5'- gGGGGGGgAgg-GCcccGGGGGCgCGCCCg -3'
miRNA:   3'- -CCUCUCgUaaaCGua-CCCCUG-GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 145160 0.71 0.686723
Target:  5'- gGGGGGGCc---GCAcuccccgccucccUGGGGGgCGCCCu -3'
miRNA:   3'- -CCUCUCGuaaaCGU-------------ACCCCUgGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 26140 0.71 0.70694
Target:  5'- -cGGGGC---UGCGUGGGGGcgcggcaggggccCCGCCCc -3'
miRNA:   3'- ccUCUCGuaaACGUACCCCU-------------GGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 80808 0.71 0.707945
Target:  5'- gGGGGAGgGggcUGCGggGcGGGGCgCGCCCg -3'
miRNA:   3'- -CCUCUCgUaa-ACGUa-C-CCCUG-GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 30280 0.71 0.707945
Target:  5'- aGGGGAGgGgagUG-GUGGGGaggguguugcuGCCGCCCg -3'
miRNA:   3'- -CCUCUCgUaa-ACgUACCCC-----------UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 127357 0.71 0.707945
Target:  5'- cGGGGAcGCGUagaaGCA-GGGaaaGGCCGCCCg -3'
miRNA:   3'- -CCUCU-CGUAaa--CGUaCCC---CUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.