miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30993 3' -55.1 NC_006560.1 + 148809 1.15 0.001423
Target:  5'- aGGAGAGCAUUUGCAUGGGGACCGCCCg -3'
miRNA:   3'- -CCUCUCGUAAACGUACCCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 65997 0.8 0.250116
Target:  5'- gGGAGAGCAc---CGUGGGGACCGCg- -3'
miRNA:   3'- -CCUCUCGUaaacGUACCCCUGGCGgg -5'
30993 3' -55.1 NC_006560.1 + 118526 0.78 0.331357
Target:  5'- gGGAG-GCGcugGCcgggGGGGACCGCCCc -3'
miRNA:   3'- -CCUCuCGUaaaCGua--CCCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 40072 0.77 0.395488
Target:  5'- gGGAGGGgAUggcgUGCgGUGGGGGCggggCGCCCg -3'
miRNA:   3'- -CCUCUCgUAa---ACG-UACCCCUG----GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 102635 0.77 0.404049
Target:  5'- gGGGGAGguUaaaCGcGGGGGCCGCCCa -3'
miRNA:   3'- -CCUCUCguAaacGUaCCCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 32687 0.76 0.43042
Target:  5'- aGAGGGCcgggGCcgGGGGcuCCGCCCg -3'
miRNA:   3'- cCUCUCGuaaaCGuaCCCCu-GGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 138498 0.76 0.439433
Target:  5'- cGAGGGCGag-GCcgGGGcGCCGCCCc -3'
miRNA:   3'- cCUCUCGUaaaCGuaCCCcUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 28816 0.76 0.443068
Target:  5'- gGGAGAGCccggaagaucCccGGGGGCCGCCCu -3'
miRNA:   3'- -CCUCUCGuaaac-----GuaCCCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 33475 0.75 0.467099
Target:  5'- aGGAGAGgcg--GCG-GGGGGCCGCCg -3'
miRNA:   3'- -CCUCUCguaaaCGUaCCCCUGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 10296 0.75 0.486033
Target:  5'- aGGGGGCGg--GCcgccGGGGACCGCCg -3'
miRNA:   3'- cCUCUCGUaaaCGua--CCCCUGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 32400 0.75 0.486033
Target:  5'- cGGGGGCGga-GgGUGGGGGCCgagGCCCg -3'
miRNA:   3'- cCUCUCGUaaaCgUACCCCUGG---CGGG- -5'
30993 3' -55.1 NC_006560.1 + 39228 0.74 0.551854
Target:  5'- gGGAGGGgcgaccgcgagcgcCAUcaGCGagggGGGGGCCGCCCu -3'
miRNA:   3'- -CCUCUC--------------GUAaaCGUa---CCCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 9658 0.74 0.554872
Target:  5'- aGGGGGGCGguaccGCGgcaGGGACCGCuCCa -3'
miRNA:   3'- -CCUCUCGUaaa--CGUac-CCCUGGCG-GG- -5'
30993 3' -55.1 NC_006560.1 + 39312 0.74 0.564965
Target:  5'- cGGGccGGGCGgg-GCgGUGGGGcgggGCCGCCCg -3'
miRNA:   3'- -CCU--CUCGUaaaCG-UACCCC----UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 27289 0.74 0.564965
Target:  5'- cGGGGcGCGgg-GCGcGGGGAgggcCCGCCCg -3'
miRNA:   3'- -CCUCuCGUaaaCGUaCCCCU----GGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 27839 0.74 0.564965
Target:  5'- gGGGGuGCcgggggUGCcgGGGGucucCCGCCCg -3'
miRNA:   3'- -CCUCuCGuaa---ACGuaCCCCu---GGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 65745 0.73 0.585287
Target:  5'- uGGGGGGC--------GGGGACCGCCCu -3'
miRNA:   3'- -CCUCUCGuaaacguaCCCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 32885 0.73 0.585287
Target:  5'- cGGGGAGgcc--GCggGGGGGCgCGCCCg -3'
miRNA:   3'- -CCUCUCguaaaCGuaCCCCUG-GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 33632 0.73 0.585287
Target:  5'- gGGGGGGCGggggGCGccGGGGGCgGCCg -3'
miRNA:   3'- -CCUCUCGUaaa-CGUa-CCCCUGgCGGg -5'
30993 3' -55.1 NC_006560.1 + 44327 0.73 0.605745
Target:  5'- cGGGGcGCuc-UGCGgcugGGGGGCgCGCCCc -3'
miRNA:   3'- -CCUCuCGuaaACGUa---CCCCUG-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.