miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30993 3' -55.1 NC_006560.1 + 41 0.66 0.937195
Target:  5'- gGGGGuGCGUUUGg--GGGGGCgCGUUUg -3'
miRNA:   3'- -CCUCuCGUAAACguaCCCCUG-GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 1510 0.69 0.829653
Target:  5'- cGGGAGCGcgUGCAUcGGGccccgggcGCgCGCCCg -3'
miRNA:   3'- cCUCUCGUaaACGUAcCCC--------UG-GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 2922 0.66 0.915839
Target:  5'- aGGcGGGCGgg-GCG-GGGGagacGCCGCCg -3'
miRNA:   3'- -CCuCUCGUaaaCGUaCCCC----UGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 3935 0.66 0.943307
Target:  5'- cGGGGGCGgcgccgcggucggcgGCGaGGGcGGCCGCCa -3'
miRNA:   3'- cCUCUCGUaaa------------CGUaCCC-CUGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 5672 0.68 0.861824
Target:  5'- cGGGGcGCGgggGCGgccGGcGGcGCCGCCCg -3'
miRNA:   3'- -CCUCuCGUaaaCGUa--CC-CC-UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 5707 0.69 0.812452
Target:  5'- aGGAucGCAUUaGCAUGcGGccggcggcGCCGCCCg -3'
miRNA:   3'- -CCUcuCGUAAaCGUACcCC--------UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 6606 0.66 0.941932
Target:  5'- cGGGGGCucggggGCucgGGGGACCggggGCUCg -3'
miRNA:   3'- cCUCUCGuaaa--CGua-CCCCUGG----CGGG- -5'
30993 3' -55.1 NC_006560.1 + 8585 0.67 0.897306
Target:  5'- cGGAGGGCcauccaGCAcacgaGGGcccccaGGCCGCCCg -3'
miRNA:   3'- -CCUCUCGuaaa--CGUa----CCC------CUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 9605 0.67 0.889982
Target:  5'- cGGAGcGCGgg-GCGcggccccUGGGG-CCGCgCCg -3'
miRNA:   3'- -CCUCuCGUaaaCGU-------ACCCCuGGCG-GG- -5'
30993 3' -55.1 NC_006560.1 + 9658 0.74 0.554872
Target:  5'- aGGGGGGCGguaccGCGgcaGGGACCGCuCCa -3'
miRNA:   3'- -CCUCUCGUaaa--CGUac-CCCUGGCG-GG- -5'
30993 3' -55.1 NC_006560.1 + 10296 0.75 0.486033
Target:  5'- aGGGGGCGg--GCcgccGGGGACCGCCg -3'
miRNA:   3'- cCUCUCGUaaaCGua--CCCCUGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 11100 0.67 0.8999
Target:  5'- gGGGGGGCGgaggaggGCGggggggGGGGGCUcagcgggcgucgaggGCCCc -3'
miRNA:   3'- -CCUCUCGUaaa----CGUa-----CCCCUGG---------------CGGG- -5'
30993 3' -55.1 NC_006560.1 + 11350 0.66 0.926999
Target:  5'- gGGGGGGCGguagaUGCGggccGGGugCGgCCg -3'
miRNA:   3'- -CCUCUCGUaa---ACGUac--CCCugGCgGG- -5'
30993 3' -55.1 NC_006560.1 + 12432 0.68 0.837986
Target:  5'- cGGGGAaC---UGCGUcGGGGcgGCCGCCCc -3'
miRNA:   3'- -CCUCUcGuaaACGUA-CCCC--UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 12797 0.72 0.657102
Target:  5'- gGGAGGGaccCGUcgGCc-GGGGGCCGCUCg -3'
miRNA:   3'- -CCUCUC---GUAaaCGuaCCCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 14189 0.67 0.903721
Target:  5'- uGGAGAaacGCccaggGCGUGGGGuggucgggcggGgCGCCCg -3'
miRNA:   3'- -CCUCU---CGuaaa-CGUACCCC-----------UgGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 15054 0.7 0.766711
Target:  5'- cGGGGGGCGacgGCGUcgguggggggcGGGGGCUcugGCCCc -3'
miRNA:   3'- -CCUCUCGUaaaCGUA-----------CCCCUGG---CGGG- -5'
30993 3' -55.1 NC_006560.1 + 15764 0.68 0.861824
Target:  5'- cGGGGGCGacuccggGCccGGGGGCCggcaggGCCCg -3'
miRNA:   3'- cCUCUCGUaaa----CGuaCCCCUGG------CGGG- -5'
30993 3' -55.1 NC_006560.1 + 15872 0.67 0.903721
Target:  5'- ----cGCGgcgGCGUGGGGGCCGgcgaCCg -3'
miRNA:   3'- ccucuCGUaaaCGUACCCCUGGCg---GG- -5'
30993 3' -55.1 NC_006560.1 + 15920 0.69 0.812452
Target:  5'- -cAGGGCGUg-GCccguUGGGGgggaGCCGCCCu -3'
miRNA:   3'- ccUCUCGUAaaCGu---ACCCC----UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.