miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30993 3' -55.1 NC_006560.1 + 150370 0.66 0.937195
Target:  5'- gGGGGuGCGUUUGg--GGGGGCgCGUUUg -3'
miRNA:   3'- -CCUCuCGUAAACguaCCCCUG-GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 149363 0.68 0.86936
Target:  5'- cGGGGAGgA---GCcgGGcGGcGCCGCCCc -3'
miRNA:   3'- -CCUCUCgUaaaCGuaCC-CC-UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 148809 1.15 0.001423
Target:  5'- aGGAGAGCAUUUGCAUGGGGACCGCCCg -3'
miRNA:   3'- -CCUCUCGUAAACGUACCCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 148676 0.66 0.926999
Target:  5'- cGGGGcGCcgUggGCGgccccGGGGCCGCCg -3'
miRNA:   3'- -CCUCuCGuaAa-CGUac---CCCUGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 147786 0.66 0.92154
Target:  5'- aGGGGGCAgcugUUGCGcaUGGGGA--GCCa -3'
miRNA:   3'- cCUCUCGUa---AACGU--ACCCCUggCGGg -5'
30993 3' -55.1 NC_006560.1 + 147293 0.66 0.941932
Target:  5'- cGGGGGGCucuggcggGCgccgggcggaagGUGGGGuCCGCUg -3'
miRNA:   3'- -CCUCUCGuaaa----CG------------UACCCCuGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 147030 0.67 0.908682
Target:  5'- cGGGGGGCcccgagacgGCcgGGGGGCgGCg- -3'
miRNA:   3'- -CCUCUCGuaaa-----CGuaCCCCUGgCGgg -5'
30993 3' -55.1 NC_006560.1 + 146509 0.68 0.876682
Target:  5'- gGGGGAGCugc-GCcgGGcGGGCCGgCg -3'
miRNA:   3'- -CCUCUCGuaaaCGuaCC-CCUGGCgGg -5'
30993 3' -55.1 NC_006560.1 + 146266 0.66 0.937195
Target:  5'- uGGGGAgGUAgc-GCGUGGGGccggacGCCGCg- -3'
miRNA:   3'- -CCUCU-CGUaaaCGUACCCC------UGGCGgg -5'
30993 3' -55.1 NC_006560.1 + 145160 0.71 0.686723
Target:  5'- gGGGGGGCc---GCAcuccccgccucccUGGGGGgCGCCCu -3'
miRNA:   3'- -CCUCUCGuaaaCGU-------------ACCCCUgGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 141780 0.68 0.86936
Target:  5'- cGAGAGCGgccGCGUGuaaacGGACaGCCCg -3'
miRNA:   3'- cCUCUCGUaaaCGUACc----CCUGgCGGG- -5'
30993 3' -55.1 NC_006560.1 + 141479 0.69 0.821139
Target:  5'- uGAGuAGCucgagggGCGUGGGGcCCGCUg -3'
miRNA:   3'- cCUC-UCGuaaa---CGUACCCCuGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 140508 0.66 0.932217
Target:  5'- gGGGGAGaagg-GC-UGcGGGGCCGCUUc -3'
miRNA:   3'- -CCUCUCguaaaCGuAC-CCCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 140482 0.67 0.883783
Target:  5'- gGGGGGGCGgagGagGUGGGGGCgGCg- -3'
miRNA:   3'- -CCUCUCGUaaaCg-UACCCCUGgCGgg -5'
30993 3' -55.1 NC_006560.1 + 140273 0.69 0.821139
Target:  5'- cGAGGGCGg--GCGgccggcgGGGGuAUCGUCCa -3'
miRNA:   3'- cCUCUCGUaaaCGUa------CCCC-UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 139328 0.66 0.932217
Target:  5'- gGGAGAgGCGggcgccucgGCGgcccgcgcggGGGGGCCGUCg -3'
miRNA:   3'- -CCUCU-CGUaaa------CGUa---------CCCCUGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 138498 0.76 0.439433
Target:  5'- cGAGGGCGag-GCcgGGGcGCCGCCCc -3'
miRNA:   3'- cCUCUCGUaaaCGuaCCCcUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 137114 0.66 0.915839
Target:  5'- cGGGcccGGGCGUacgagcGCAUGGGGGCCcugaCCa -3'
miRNA:   3'- -CCU---CUCGUAaa----CGUACCCCUGGcg--GG- -5'
30993 3' -55.1 NC_006560.1 + 135562 0.69 0.812452
Target:  5'- cGGGAGCug--GC--GGGGcACCGCCUg -3'
miRNA:   3'- cCUCUCGuaaaCGuaCCCC-UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 135384 0.67 0.890659
Target:  5'- gGGGGGGCGgagGCcgcGGGGGugUCGCUCg -3'
miRNA:   3'- -CCUCUCGUaaaCGua-CCCCU--GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.