miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30994 3' -56.4 NC_006560.1 + 148594 1.12 0.001722
Target:  5'- gGCGGUAGAUACCAGCCCCCGAGUGACg -3'
miRNA:   3'- -CGCCAUCUAUGGUCGGGGGCUCACUG- -5'
30994 3' -56.4 NC_006560.1 + 116424 0.76 0.372797
Target:  5'- aGgGGUAGAgcACCGcGCCCCCGGGgGGCu -3'
miRNA:   3'- -CgCCAUCUa-UGGU-CGGGGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 147921 0.76 0.372797
Target:  5'- gGCGGgggAGAggggGCCcgcGGCCCCCGGGaGGCg -3'
miRNA:   3'- -CGCCa--UCUa---UGG---UCGGGGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 116727 0.74 0.482053
Target:  5'- cGCGGUAGcgGCCgacggccgcgaucccGGUCCCCGAGgccgcguguUGGCg -3'
miRNA:   3'- -CGCCAUCuaUGG---------------UCGGGGGCUC---------ACUG- -5'
30994 3' -56.4 NC_006560.1 + 120524 0.73 0.545156
Target:  5'- aGCGGggcgccgAGAggauCCGGCCCgaauccgCCGGGUGGCg -3'
miRNA:   3'- -CGCCa------UCUau--GGUCGGG-------GGCUCACUG- -5'
30994 3' -56.4 NC_006560.1 + 73700 0.73 0.54615
Target:  5'- gGCGGUGGcgGCCcccgaGGCgCCCGGGggGACc -3'
miRNA:   3'- -CGCCAUCuaUGG-----UCGgGGGCUCa-CUG- -5'
30994 3' -56.4 NC_006560.1 + 45295 0.73 0.54615
Target:  5'- cGCGGaGGAcGCC-GUCCCCGGG-GACg -3'
miRNA:   3'- -CGCCaUCUaUGGuCGGGGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 42932 0.73 0.547144
Target:  5'- cGCGGUAGcgcggcgccggcuCCAGCCCCgCGGG-GGCg -3'
miRNA:   3'- -CGCCAUCuau----------GGUCGGGG-GCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 45987 0.72 0.56614
Target:  5'- cGCGGUAGGgcgccCCGGCCgUCGGG-GGCg -3'
miRNA:   3'- -CGCCAUCUau---GGUCGGgGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 118365 0.72 0.576206
Target:  5'- gGCGGUGcucgcggGCCuggAGCCCCCGGGgGGCg -3'
miRNA:   3'- -CGCCAUcua----UGG---UCGGGGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 147568 0.72 0.586312
Target:  5'- gGCGGggAGAggGCgcgcacggugCGGCCCCCGAggGUGACg -3'
miRNA:   3'- -CGCCa-UCUa-UG----------GUCGGGGGCU--CACUG- -5'
30994 3' -56.4 NC_006560.1 + 148788 0.72 0.586312
Target:  5'- gGCGGgcGG-GCCGGcCCCCCGAG-GAg -3'
miRNA:   3'- -CGCCauCUaUGGUC-GGGGGCUCaCUg -5'
30994 3' -56.4 NC_006560.1 + 95042 0.71 0.606617
Target:  5'- cGCGGccgGGGaGCCGGCCCgCGAGgccGGCc -3'
miRNA:   3'- -CGCCa--UCUaUGGUCGGGgGCUCa--CUG- -5'
30994 3' -56.4 NC_006560.1 + 100173 0.71 0.647391
Target:  5'- gGCGGUGGAgAgCAGCgCgCGGGUGAg -3'
miRNA:   3'- -CGCCAUCUaUgGUCGgGgGCUCACUg -5'
30994 3' -56.4 NC_006560.1 + 7607 0.71 0.647391
Target:  5'- cGCGGcAGA-ACCGGCgCCCGAGacccGGCg -3'
miRNA:   3'- -CGCCaUCUaUGGUCGgGGGCUCa---CUG- -5'
30994 3' -56.4 NC_006560.1 + 66212 0.71 0.654522
Target:  5'- gGCGGUAGGUgaacGCCagguagagaaacgcGGCCCCCGGGc--- -3'
miRNA:   3'- -CGCCAUCUA----UGG--------------UCGGGGGCUCacug -5'
30994 3' -56.4 NC_006560.1 + 26156 0.7 0.667738
Target:  5'- cGCGGcAGggGCCccGCCCCCGGG-GAg -3'
miRNA:   3'- -CGCCaUCuaUGGu-CGGGGGCUCaCUg -5'
30994 3' -56.4 NC_006560.1 + 14104 0.7 0.677873
Target:  5'- cCGGUGGAggaCGGCCCCCGcGcccaUGGCg -3'
miRNA:   3'- cGCCAUCUaugGUCGGGGGCuC----ACUG- -5'
30994 3' -56.4 NC_006560.1 + 128620 0.69 0.737588
Target:  5'- uCGGU--GUACCAGUCCCUGGGgcgggugcgGACg -3'
miRNA:   3'- cGCCAucUAUGGUCGGGGGCUCa--------CUG- -5'
30994 3' -56.4 NC_006560.1 + 62616 0.69 0.737588
Target:  5'- gGCGGggaGGGUGCCGuccGCCCUCuccGUGACg -3'
miRNA:   3'- -CGCCa--UCUAUGGU---CGGGGGcu-CACUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.