miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30994 3' -56.4 NC_006560.1 + 3281 0.66 0.875668
Target:  5'- cGCGG-GGGU-CgGGCCCgCCGGGcgGGCg -3'
miRNA:   3'- -CGCCaUCUAuGgUCGGG-GGCUCa-CUG- -5'
30994 3' -56.4 NC_006560.1 + 7607 0.71 0.647391
Target:  5'- cGCGGcAGA-ACCGGCgCCCGAGacccGGCg -3'
miRNA:   3'- -CGCCaUCUaUGGUCGgGGGCUCa---CUG- -5'
30994 3' -56.4 NC_006560.1 + 11355 0.66 0.889602
Target:  5'- gGCGGUAGAUGCgGGCC---GGGUG-Cg -3'
miRNA:   3'- -CGCCAUCUAUGgUCGGgggCUCACuG- -5'
30994 3' -56.4 NC_006560.1 + 12715 0.67 0.84525
Target:  5'- gGgGGUGGggGCgGGgCCCUGgauGGUGACg -3'
miRNA:   3'- -CgCCAUCuaUGgUCgGGGGC---UCACUG- -5'
30994 3' -56.4 NC_006560.1 + 14104 0.7 0.677873
Target:  5'- cCGGUGGAggaCGGCCCCCGcGcccaUGGCg -3'
miRNA:   3'- cGCCAUCUaugGUCGGGGGCuC----ACUG- -5'
30994 3' -56.4 NC_006560.1 + 16279 0.66 0.882745
Target:  5'- cGCGG-AGAcgGCCGaCCCCUGGGgcgcGGCg -3'
miRNA:   3'- -CGCCaUCUa-UGGUcGGGGGCUCa---CUG- -5'
30994 3' -56.4 NC_006560.1 + 16645 0.66 0.875668
Target:  5'- gGCGGc-GGUugCGcGCCgCCCG-GUGGCg -3'
miRNA:   3'- -CGCCauCUAugGU-CGG-GGGCuCACUG- -5'
30994 3' -56.4 NC_006560.1 + 18286 0.67 0.832199
Target:  5'- uGCGGcAG-UGCCggauccuggcggcggAGCCCCUGGG-GACg -3'
miRNA:   3'- -CGCCaUCuAUGG---------------UCGGGGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 26156 0.7 0.667738
Target:  5'- cGCGGcAGggGCCccGCCCCCGGG-GAg -3'
miRNA:   3'- -CGCCaUCuaUGGu-CGGGGGCUCaCUg -5'
30994 3' -56.4 NC_006560.1 + 32844 0.66 0.882745
Target:  5'- cGCGGgcGGcgGgCAGCCCCCcgggcaGAGggGGCa -3'
miRNA:   3'- -CGCCauCUa-UgGUCGGGGG------CUCa-CUG- -5'
30994 3' -56.4 NC_006560.1 + 37784 0.66 0.875668
Target:  5'- gGCGGcAGGgccACCAGCUCCgCGAauUGACg -3'
miRNA:   3'- -CGCCaUCUa--UGGUCGGGG-GCUc-ACUG- -5'
30994 3' -56.4 NC_006560.1 + 40086 0.66 0.896234
Target:  5'- uGCGGUGGggGCgGGgCgCCCGGGccgccgGGCg -3'
miRNA:   3'- -CGCCAUCuaUGgUCgG-GGGCUCa-----CUG- -5'
30994 3' -56.4 NC_006560.1 + 42646 0.67 0.853159
Target:  5'- gGCGGcgaacGCCuGCCCCCGGGgcgccaUGGCg -3'
miRNA:   3'- -CGCCaucuaUGGuCGGGGGCUC------ACUG- -5'
30994 3' -56.4 NC_006560.1 + 42932 0.73 0.547144
Target:  5'- cGCGGUAGcgcggcgccggcuCCAGCCCCgCGGG-GGCg -3'
miRNA:   3'- -CGCCAUCuau----------GGUCGGGG-GCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 45295 0.73 0.54615
Target:  5'- cGCGGaGGAcGCC-GUCCCCGGG-GACg -3'
miRNA:   3'- -CGCCaUCUaUGGuCGGGGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 45987 0.72 0.56614
Target:  5'- cGCGGUAGGgcgccCCGGCCgUCGGG-GGCg -3'
miRNA:   3'- -CGCCAUCUau---GGUCGGgGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 47037 0.66 0.879941
Target:  5'- gGCGGcgcgccacgACC-GCCCCCGAGaGACc -3'
miRNA:   3'- -CGCCaucua----UGGuCGGGGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 51624 0.67 0.860869
Target:  5'- gGCGGgcGcgGCgAGCCCgCCGuG-GGCg -3'
miRNA:   3'- -CGCCauCuaUGgUCGGG-GGCuCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 52600 0.66 0.902638
Target:  5'- gGCGGUGGcgACgGGCgggcugcggauCCCCGAGagcccgccgGGCg -3'
miRNA:   3'- -CGCCAUCuaUGgUCG-----------GGGGCUCa--------CUG- -5'
30994 3' -56.4 NC_006560.1 + 55299 0.68 0.820399
Target:  5'- cGCGGUGGucaccUGCUGGCCCaCgGGGUcGCg -3'
miRNA:   3'- -CGCCAUCu----AUGGUCGGG-GgCUCAcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.