miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30994 5' -69.2 NC_006560.1 + 148628 1.08 0.000331
Target:  5'- gCGGUCCCCGACGGGCGGGCCCCGCCGg -3'
miRNA:   3'- -GCCAGGGGCUGCCCGCCCGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 33442 0.82 0.028035
Target:  5'- gGGUCCCCGcgcacGCGGGCGGGCCCgGgCa -3'
miRNA:   3'- gCCAGGGGC-----UGCCCGCCCGGGgCgGc -5'
30994 5' -69.2 NC_006560.1 + 1211 0.79 0.051949
Target:  5'- aGGcUCCCCGG-GGGCgGGGCCCCuGCCGc -3'
miRNA:   3'- gCC-AGGGGCUgCCCG-CCCGGGG-CGGC- -5'
30994 5' -69.2 NC_006560.1 + 26289 0.78 0.061641
Target:  5'- gGGagCCUGGCGGGCGGcuucuGCCCCGUCGg -3'
miRNA:   3'- gCCagGGGCUGCCCGCC-----CGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 29058 0.77 0.064718
Target:  5'- cCGcGUCUCCGGCcGGCGGGgCCCGCCc -3'
miRNA:   3'- -GC-CAGGGGCUGcCCGCCCgGGGCGGc -5'
30994 5' -69.2 NC_006560.1 + 52127 0.77 0.066312
Target:  5'- aGGcgCUCCGGCGGGCcGGCCCCGaCCa -3'
miRNA:   3'- gCCa-GGGGCUGCCCGcCCGGGGC-GGc -5'
30994 5' -69.2 NC_006560.1 + 1100 0.77 0.066312
Target:  5'- aGGcUCCCCGGCGGcGCGaGCCCCGCg- -3'
miRNA:   3'- gCC-AGGGGCUGCC-CGCcCGGGGCGgc -5'
30994 5' -69.2 NC_006560.1 + 551 0.77 0.071322
Target:  5'- gGGUCCCCGGCGucccccGCGcGCCCCGUCGg -3'
miRNA:   3'- gCCAGGGGCUGCc-----CGCcCGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 36103 0.77 0.071322
Target:  5'- gCGGggCCgCGGCGGGCaccgGGGCCgCCGCCGc -3'
miRNA:   3'- -GCCa-GGgGCUGCCCG----CCCGG-GGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 5635 0.77 0.071322
Target:  5'- cCGG-CCggCGACGGGCGGcGCCCgGCCGg -3'
miRNA:   3'- -GCCaGGg-GCUGCCCGCC-CGGGgCGGC- -5'
30994 5' -69.2 NC_006560.1 + 131675 0.76 0.076695
Target:  5'- aGG-CCCUGGCGGGCGGggggcuGCUCCGCCc -3'
miRNA:   3'- gCCaGGGGCUGCCCGCC------CGGGGCGGc -5'
30994 5' -69.2 NC_006560.1 + 21644 0.76 0.078571
Target:  5'- gCGaUCCUCGACGGGCGGcGCCgCCgGCCGc -3'
miRNA:   3'- -GCcAGGGGCUGCCCGCC-CGG-GG-CGGC- -5'
30994 5' -69.2 NC_006560.1 + 21683 0.76 0.078571
Target:  5'- gCGaUCCUCGACGGGCGGcGCCgCCgGCCGc -3'
miRNA:   3'- -GCcAGGGGCUGCCCGCC-CGG-GG-CGGC- -5'
30994 5' -69.2 NC_006560.1 + 453 0.76 0.082455
Target:  5'- gCGGccUCCCCGGCGGGCGGccagucacCCCCGUCc -3'
miRNA:   3'- -GCC--AGGGGCUGCCCGCCc-------GGGGCGGc -5'
30994 5' -69.2 NC_006560.1 + 32164 0.75 0.090779
Target:  5'- gGcGUCCCCGGCgccgaGGGCGGGUcgaggCCCGCCc -3'
miRNA:   3'- gC-CAGGGGCUG-----CCCGCCCG-----GGGCGGc -5'
30994 5' -69.2 NC_006560.1 + 149839 0.75 0.092982
Target:  5'- gCGGcCCCCGgccGCGGGCGGGagaCCC-CCGg -3'
miRNA:   3'- -GCCaGGGGC---UGCCCGCCCg--GGGcGGC- -5'
30994 5' -69.2 NC_006560.1 + 145276 0.75 0.092982
Target:  5'- cCGGccCCCCGGCccccuGGGCGGGCCUCgGCCc -3'
miRNA:   3'- -GCCa-GGGGCUG-----CCCGCCCGGGG-CGGc -5'
30994 5' -69.2 NC_006560.1 + 119588 0.75 0.095235
Target:  5'- cCGGccccgcccugcUCCCCGGCGGGgcccgaGGGCCCCGaCGg -3'
miRNA:   3'- -GCC-----------AGGGGCUGCCCg-----CCCGGGGCgGC- -5'
30994 5' -69.2 NC_006560.1 + 12081 0.75 0.095235
Target:  5'- gCGGUCgCCCGGCGGGUaguGGaacagcuccaccGCCCCGUCGu -3'
miRNA:   3'- -GCCAG-GGGCUGCCCG---CC------------CGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 6340 0.75 0.09754
Target:  5'- gCGGgcgccccgCCCCGGCccgcccuucgGGGCGGGCCC-GCCGc -3'
miRNA:   3'- -GCCa-------GGGGCUG----------CCCGCCCGGGgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.