miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30994 5' -69.2 NC_006560.1 + 113 0.67 0.329323
Target:  5'- gCGG-CCgCGGCcggcgcggguuuGGGCGgggccGGCCCCGCCc -3'
miRNA:   3'- -GCCaGGgGCUG------------CCCGC-----CCGGGGCGGc -5'
30994 5' -69.2 NC_006560.1 + 163 0.71 0.171182
Target:  5'- cCGG-CCCCGcccCGcGGUcccGGCCCCGCCGg -3'
miRNA:   3'- -GCCaGGGGCu--GC-CCGc--CCGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 230 0.66 0.394083
Target:  5'- cCGG-CCCgCGGCucGGuGCGGGCCCCa--- -3'
miRNA:   3'- -GCCaGGG-GCUG--CC-CGCCCGGGGcggc -5'
30994 5' -69.2 NC_006560.1 + 453 0.76 0.082455
Target:  5'- gCGGccUCCCCGGCGGGCGGccagucacCCCCGUCc -3'
miRNA:   3'- -GCC--AGGGGCUGCCCGCCc-------GGGGCGGc -5'
30994 5' -69.2 NC_006560.1 + 517 0.67 0.322631
Target:  5'- aCGGgCgCCGGgGGGCGGcGgCCgGCCGc -3'
miRNA:   3'- -GCCaGgGGCUgCCCGCC-CgGGgCGGC- -5'
30994 5' -69.2 NC_006560.1 + 551 0.77 0.071322
Target:  5'- gGGUCCCCGGCGucccccGCGcGCCCCGUCGg -3'
miRNA:   3'- gCCAGGGGCUGCc-----CGCcCGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 659 0.69 0.238519
Target:  5'- aGGUucgcaCCCCGgcgcgcccgcggcGCGGGCucgucgcGGGCCCCGUCc -3'
miRNA:   3'- gCCA-----GGGGC-------------UGCCCG-------CCCGGGGCGGc -5'
30994 5' -69.2 NC_006560.1 + 751 0.66 0.378996
Target:  5'- gCGG-CCCCGucccccccccccGCGGcGCGGGUCCUuucuggGCCu -3'
miRNA:   3'- -GCCaGGGGC------------UGCC-CGCCCGGGG------CGGc -5'
30994 5' -69.2 NC_006560.1 + 983 0.7 0.197936
Target:  5'- cCGGgggcgcgccccucgCCCCGGCcgGGGCGccgucuccGCCCCGCCGu -3'
miRNA:   3'- -GCCa-------------GGGGCUG--CCCGCc-------CGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 1100 0.77 0.066312
Target:  5'- aGGcUCCCCGGCGGcGCGaGCCCCGCg- -3'
miRNA:   3'- gCC-AGGGGCUGCC-CGCcCGGGGCGgc -5'
30994 5' -69.2 NC_006560.1 + 1154 0.66 0.386491
Target:  5'- gGGUUCCUGGCGGcCGGGUucUCUGCgGa -3'
miRNA:   3'- gCCAGGGGCUGCCcGCCCG--GGGCGgC- -5'
30994 5' -69.2 NC_006560.1 + 1211 0.79 0.051949
Target:  5'- aGGcUCCCCGG-GGGCgGGGCCCCuGCCGc -3'
miRNA:   3'- gCC-AGGGGCUgCCCG-CCCGGGG-CGGC- -5'
30994 5' -69.2 NC_006560.1 + 1335 0.69 0.244854
Target:  5'- cCGGgCgCCCGACGGgaccgugcgcGCGGGUCCC-CCGc -3'
miRNA:   3'- -GCCaG-GGGCUGCC----------CGCCCGGGGcGGC- -5'
30994 5' -69.2 NC_006560.1 + 1496 0.67 0.309554
Target:  5'- gCGGcCCacgCCGGCGGGagcgcgugcauCGGGCCCCGggcgcgcgcCCGg -3'
miRNA:   3'- -GCCaGG---GGCUGCCC-----------GCCCGGGGC---------GGC- -5'
30994 5' -69.2 NC_006560.1 + 2915 0.74 0.112511
Target:  5'- gCGGUCCa-GGCGGGCGGGgCgggggagacgCCGCCGa -3'
miRNA:   3'- -GCCAGGggCUGCCCGCCCgG----------GGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 3076 0.7 0.205172
Target:  5'- cCGGagCCCGGCucGGGCGGGCCgcagCGCgCGg -3'
miRNA:   3'- -GCCagGGGCUG--CCCGCCCGGg---GCG-GC- -5'
30994 5' -69.2 NC_006560.1 + 3250 0.69 0.25024
Target:  5'- gCGGgCCCgGGCGGcgcGCGGcGCCagCCGCCGc -3'
miRNA:   3'- -GCCaGGGgCUGCC---CGCC-CGG--GGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 3286 0.68 0.278643
Target:  5'- gGGUCgggCCCGccggGCGGGCGGGCggugagCGCCGc -3'
miRNA:   3'- gCCAG---GGGC----UGCCCGCCCGgg----GCGGC- -5'
30994 5' -69.2 NC_006560.1 + 3399 0.7 0.21311
Target:  5'- cCGGcUCUucuugcgcgCCGGCGGGCGGGCggcgggcgcgggcgCCCGCgGg -3'
miRNA:   3'- -GCC-AGG---------GGCUGCCCGCCCG--------------GGGCGgC- -5'
30994 5' -69.2 NC_006560.1 + 4425 0.66 0.378996
Target:  5'- uCGGgcgCCCacACGGGCGcGGgCgCGCCGg -3'
miRNA:   3'- -GCCa--GGGgcUGCCCGC-CCgGgGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.