miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30994 5' -69.2 NC_006560.1 + 150492 0.71 0.171182
Target:  5'- cCGG-CCCCGcccCGcGGUcccGGCCCCGCCGg -3'
miRNA:   3'- -GCCaGGGGCu--GC-CCGc--CCGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 150442 0.67 0.329323
Target:  5'- gCGG-CCgCGGCcggcgcggguuuGGGCGgggccGGCCCCGCCc -3'
miRNA:   3'- -GCCaGGgGCUG------------CCCGC-----CCGGGGCGGc -5'
30994 5' -69.2 NC_006560.1 + 149876 0.7 0.196162
Target:  5'- cCGGcacCCCCGgccGCGGaaGGGCCCCGCgCGc -3'
miRNA:   3'- -GCCa--GGGGC---UGCCcgCCCGGGGCG-GC- -5'
30994 5' -69.2 NC_006560.1 + 149839 0.75 0.092982
Target:  5'- gCGGcCCCCGgccGCGGGCGGGagaCCC-CCGg -3'
miRNA:   3'- -GCCaGGGGC---UGCCCGCCCg--GGGcGGC- -5'
30994 5' -69.2 NC_006560.1 + 148880 0.66 0.357105
Target:  5'- gCGGcCCCCGGggaucuucCGGGCucuCCCCGCUGg -3'
miRNA:   3'- -GCCaGGGGCU--------GCCCGcccGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 148834 0.7 0.196162
Target:  5'- cCGGgcuUCCCCGAUGGGC-GGUCCCaUCGa -3'
miRNA:   3'- -GCC---AGGGGCUGCCCGcCCGGGGcGGC- -5'
30994 5' -69.2 NC_006560.1 + 148759 0.69 0.26018
Target:  5'- gCGG-CCCCGACGGGCgccauguuggaggGGGCgggcgggCCgGCCc -3'
miRNA:   3'- -GCCaGGGGCUGCCCG-------------CCCG-------GGgCGGc -5'
30994 5' -69.2 NC_006560.1 + 148628 1.08 0.000331
Target:  5'- gCGGUCCCCGACGGGCGGGCCCCGCCGg -3'
miRNA:   3'- -GCCAGGGGCUGCCCGCCCGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 147940 0.7 0.214538
Target:  5'- gCGGcCCCCGGgaGGCGGGCCCgGgCu -3'
miRNA:   3'- -GCCaGGGGCUgcCCGCCCGGGgCgGc -5'
30994 5' -69.2 NC_006560.1 + 147591 0.66 0.3716
Target:  5'- gCGGcCCCCGA-GGGUGacggaGGCCggggCCGCCu -3'
miRNA:   3'- -GCCaGGGGCUgCCCGC-----CCGG----GGCGGc -5'
30994 5' -69.2 NC_006560.1 + 147282 0.66 0.378996
Target:  5'- cCGGggCCgGGCGGG-GGGCUCUGgCGg -3'
miRNA:   3'- -GCCagGGgCUGCCCgCCCGGGGCgGC- -5'
30994 5' -69.2 NC_006560.1 + 147012 0.67 0.336116
Target:  5'- gCGGggCCaCCGgggccACGGG-GGGCCCCgagacgGCCGg -3'
miRNA:   3'- -GCCa-GG-GGC-----UGCCCgCCCGGGG------CGGC- -5'
30994 5' -69.2 NC_006560.1 + 146742 0.66 0.394083
Target:  5'- gGGUCugagCCUGAgucugggccCGGGUcuGGGCCCgCGCCu -3'
miRNA:   3'- gCCAG----GGGCU---------GCCCG--CCCGGG-GCGGc -5'
30994 5' -69.2 NC_006560.1 + 146510 0.66 0.386491
Target:  5'- gGGgagCUgCGcCGGGCGGGCCggcgCGUCGg -3'
miRNA:   3'- gCCa--GGgGCuGCCCGCCCGGg---GCGGC- -5'
30994 5' -69.2 NC_006560.1 + 145824 0.66 0.394083
Target:  5'- cCGG-CCUCG-CGcGGCGGGCCgggggCGCCc -3'
miRNA:   3'- -GCCaGGGGCuGC-CCGCCCGGg----GCGGc -5'
30994 5' -69.2 NC_006560.1 + 145561 0.68 0.302536
Target:  5'- cCGG-CCCCGcCcGGCcgugaccggccccGGGCCCCGCUc -3'
miRNA:   3'- -GCCaGGGGCuGcCCG-------------CCCGGGGCGGc -5'
30994 5' -69.2 NC_006560.1 + 145509 0.7 0.196162
Target:  5'- -uGUCCCCugcucuccCGGGCGGGCCUCGaCCc -3'
miRNA:   3'- gcCAGGGGcu------GCCCGCCCGGGGC-GGc -5'
30994 5' -69.2 NC_006560.1 + 145462 0.73 0.123659
Target:  5'- uGuGUCCCCG--GGGgGGGCUCCGCCc -3'
miRNA:   3'- gC-CAGGGGCugCCCgCCCGGGGCGGc -5'
30994 5' -69.2 NC_006560.1 + 145276 0.75 0.092982
Target:  5'- cCGGccCCCCGGCccccuGGGCGGGCCUCgGCCc -3'
miRNA:   3'- -GCCa-GGGGCUG-----CCCGCCCGGGG-CGGc -5'
30994 5' -69.2 NC_006560.1 + 145122 0.68 0.296262
Target:  5'- cCGuGUCCCUG-CGGG-GGGCucuggccCCCGCCc -3'
miRNA:   3'- -GC-CAGGGGCuGCCCgCCCG-------GGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.