miRNA display CGI


Results 21 - 40 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30994 5' -69.2 NC_006560.1 + 4991 0.68 0.266984
Target:  5'- gGGUCCgagCCGG-GGGCGGGgugCCCGUCGc -3'
miRNA:   3'- gCCAGG---GGCUgCCCGCCCg--GGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 5079 0.66 0.40177
Target:  5'- -cGUCgCCGGCGuGCGGcGCgCCGCCc -3'
miRNA:   3'- gcCAGgGGCUGCcCGCC-CGgGGCGGc -5'
30994 5' -69.2 NC_006560.1 + 5151 0.68 0.278643
Target:  5'- gCGGggCCCgGGCcggggccgcggGGGCGGGCCgCGgCGa -3'
miRNA:   3'- -GCCa-GGGgCUG-----------CCCGCCCGGgGCgGC- -5'
30994 5' -69.2 NC_006560.1 + 5193 0.67 0.336116
Target:  5'- gCGG-CCCCGACGGcGgGGacagcGCCCgGgCCGu -3'
miRNA:   3'- -GCCaGGGGCUGCC-CgCC-----CGGGgC-GGC- -5'
30994 5' -69.2 NC_006560.1 + 5345 0.69 0.244321
Target:  5'- gGcGUCCUCGGCGGGCcgucguccGGGUCCggcgagcccgcgcCGCCGa -3'
miRNA:   3'- gC-CAGGGGCUGCCCG--------CCCGGG-------------GCGGC- -5'
30994 5' -69.2 NC_006560.1 + 5635 0.77 0.071322
Target:  5'- cCGG-CCggCGACGGGCGGcGCCCgGCCGg -3'
miRNA:   3'- -GCCaGGg-GCUGCCCGCC-CGGGgCGGC- -5'
30994 5' -69.2 NC_006560.1 + 6340 0.75 0.09754
Target:  5'- gCGGgcgccccgCCCCGGCccgcccuucgGGGCGGGCCC-GCCGc -3'
miRNA:   3'- -GCCa-------GGGGCUG----------CCCGCCCGGGgCGGC- -5'
30994 5' -69.2 NC_006560.1 + 9145 0.66 0.389516
Target:  5'- aGGUCUucggcgacgCCGAUGGGaacgucgggcgccuCGGGCCCgcgacgggcgucagCGCCGg -3'
miRNA:   3'- gCCAGG---------GGCUGCCC--------------GCCCGGG--------------GCGGC- -5'
30994 5' -69.2 NC_006560.1 + 10273 0.68 0.301273
Target:  5'- uCGGcUCCCGcccccuccgcgagaGgGGGCGGGCCgccggggaCCGCCGc -3'
miRNA:   3'- -GCCaGGGGC--------------UgCCCGCCCGG--------GGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 10483 0.71 0.175138
Target:  5'- uCGGggCCCGGgGcGG-GGGCCCCGUCGg -3'
miRNA:   3'- -GCCagGGGCUgC-CCgCCCGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 11231 0.68 0.266984
Target:  5'- gCGGUCUgCGACGGGCGccGCUUgGCCc -3'
miRNA:   3'- -GCCAGGgGCUGCCCGCc-CGGGgCGGc -5'
30994 5' -69.2 NC_006560.1 + 12081 0.75 0.095235
Target:  5'- gCGGUCgCCCGGCGGGUaguGGaacagcuccaccGCCCCGUCGu -3'
miRNA:   3'- -GCCAG-GGGCUGCCCG---CC------------CGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 12181 0.68 0.275103
Target:  5'- aGGUCCCCcaGGaaGGCgccguccgccccgacGGGCCCCGCgGc -3'
miRNA:   3'- gCCAGGGG--CUgcCCG---------------CCCGGGGCGgC- -5'
30994 5' -69.2 NC_006560.1 + 13363 0.69 0.244854
Target:  5'- aGGUUguagcgcgcgCCCGGcCGGGCcgccucggGGGCCCCGCg- -3'
miRNA:   3'- gCCAG----------GGGCU-GCCCG--------CCCGGGGCGgc -5'
30994 5' -69.2 NC_006560.1 + 13558 0.68 0.266984
Target:  5'- gGGUCCgccuucugcuCCGGCGGGggcaggGGGcCCCCGCgGa -3'
miRNA:   3'- gCCAGG----------GGCUGCCCg-----CCC-GGGGCGgC- -5'
30994 5' -69.2 NC_006560.1 + 15127 0.71 0.1875
Target:  5'- gGGUCUUCGuggucGCGGGCucuGGGCCCC-CCGc -3'
miRNA:   3'- gCCAGGGGC-----UGCCCG---CCCGGGGcGGC- -5'
30994 5' -69.2 NC_006560.1 + 15186 0.73 0.135825
Target:  5'- aCGGgcgucgcgccCUCCGGCgGGGCGGgacucguucccGCCCCGCCGg -3'
miRNA:   3'- -GCCa---------GGGGCUG-CCCGCC-----------CGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 15487 0.69 0.244854
Target:  5'- gGGUCggCGACGcGCucgGGGCCCCGCCc -3'
miRNA:   3'- gCCAGggGCUGCcCG---CCCGGGGCGGc -5'
30994 5' -69.2 NC_006560.1 + 15775 0.67 0.336116
Target:  5'- cCGGg-CCCGG-GGGCcggcaGGGCCCggCGCCGg -3'
miRNA:   3'- -GCCagGGGCUgCCCG-----CCCGGG--GCGGC- -5'
30994 5' -69.2 NC_006560.1 + 15976 0.68 0.284622
Target:  5'- -cGUgCCCGGagaGGGCGccGCCCCGCCc -3'
miRNA:   3'- gcCAgGGGCUg--CCCGCc-CGGGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.