miRNA display CGI


Results 21 - 40 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30994 5' -69.2 NC_006560.1 + 102213 0.66 0.386491
Target:  5'- gCGGUCCUgGAUGGuGUGGuaCCacguGCCGa -3'
miRNA:   3'- -GCCAGGGgCUGCC-CGCCcgGGg---CGGC- -5'
30994 5' -69.2 NC_006560.1 + 117979 0.66 0.386491
Target:  5'- uGGcgCCUgGGCGcGGCGGcGCCCgCGgCGg -3'
miRNA:   3'- gCCa-GGGgCUGC-CCGCC-CGGG-GCgGC- -5'
30994 5' -69.2 NC_006560.1 + 146510 0.66 0.386491
Target:  5'- gGGgagCUgCGcCGGGCGGGCCggcgCGUCGg -3'
miRNA:   3'- gCCa--GGgGCuGCCCGCCCGGg---GCGGC- -5'
30994 5' -69.2 NC_006560.1 + 39154 0.66 0.378996
Target:  5'- uGGUCgaUGuuuuCGGGCGGGgccgccCCCCGUCGg -3'
miRNA:   3'- gCCAGggGCu---GCCCGCCC------GGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 4425 0.66 0.378996
Target:  5'- uCGGgcgCCCacACGGGCGcGGgCgCGCCGg -3'
miRNA:   3'- -GCCa--GGGgcUGCCCGC-CCgGgGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 26041 0.66 0.378996
Target:  5'- aCGGU-CCCGuCGGGCgcccggGGGCUCgggaGCCGu -3'
miRNA:   3'- -GCCAgGGGCuGCCCG------CCCGGGg---CGGC- -5'
30994 5' -69.2 NC_006560.1 + 130873 0.66 0.378996
Target:  5'- gCGGUUCgggCCGAgGGGUucucGGCCCCGgCGc -3'
miRNA:   3'- -GCCAGG---GGCUgCCCGc---CCGGGGCgGC- -5'
30994 5' -69.2 NC_006560.1 + 147282 0.66 0.378996
Target:  5'- cCGGggCCgGGCGGG-GGGCUCUGgCGg -3'
miRNA:   3'- -GCCagGGgCUGCCCgCCCGGGGCgGC- -5'
30994 5' -69.2 NC_006560.1 + 751 0.66 0.378996
Target:  5'- gCGG-CCCCGucccccccccccGCGGcGCGGGUCCUuucuggGCCu -3'
miRNA:   3'- -GCCaGGGGC------------UGCC-CGCCCGGGG------CGGc -5'
30994 5' -69.2 NC_006560.1 + 30090 0.66 0.378996
Target:  5'- --cUCCCCGGgGaGGC-GGCCCCgGCCu -3'
miRNA:   3'- gccAGGGGCUgC-CCGcCCGGGG-CGGc -5'
30994 5' -69.2 NC_006560.1 + 43338 0.66 0.378996
Target:  5'- gGGgaaCCCCG-CGGccGCGGGC-CCGCgGg -3'
miRNA:   3'- gCCa--GGGGCuGCC--CGCCCGgGGCGgC- -5'
30994 5' -69.2 NC_006560.1 + 47734 0.66 0.378996
Target:  5'- uCGGggCCCCGGCccGCGGcGCCgCCGCg- -3'
miRNA:   3'- -GCCa-GGGGCUGccCGCC-CGG-GGCGgc -5'
30994 5' -69.2 NC_006560.1 + 67077 0.66 0.378996
Target:  5'- gCGGggcugCCCgCGgcgccagagagcGCGGGCGGaGCCCC-CUGg -3'
miRNA:   3'- -GCCa----GGG-GC------------UGCCCGCC-CGGGGcGGC- -5'
30994 5' -69.2 NC_006560.1 + 35298 0.66 0.3716
Target:  5'- gGGUCCgggggcgCGGCGGGggcuCGGGCUCgGCCc -3'
miRNA:   3'- gCCAGGg------GCUGCCC----GCCCGGGgCGGc -5'
30994 5' -69.2 NC_006560.1 + 84079 0.66 0.3716
Target:  5'- uGGgCCCUGuuCGGGCacccCCCCGCCGg -3'
miRNA:   3'- gCCaGGGGCu-GCCCGccc-GGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 64970 0.66 0.3716
Target:  5'- -cGUCCCCcucGGCgGGGCcGGCCgCCGCgGg -3'
miRNA:   3'- gcCAGGGG---CUG-CCCGcCCGG-GGCGgC- -5'
30994 5' -69.2 NC_006560.1 + 131176 0.66 0.3716
Target:  5'- gCGG-CCgCCG-CGGG-GGcGCCCgGCCGc -3'
miRNA:   3'- -GCCaGG-GGCuGCCCgCC-CGGGgCGGC- -5'
30994 5' -69.2 NC_006560.1 + 55456 0.66 0.3716
Target:  5'- cCGGggCgCCCG--GGGCaGGgCCCGCCGg -3'
miRNA:   3'- -GCCa-G-GGGCugCCCGcCCgGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 130613 0.66 0.3716
Target:  5'- cCGG-CCgCgCGGCuGGcGUGGGCCCgGCUGg -3'
miRNA:   3'- -GCCaGG-G-GCUG-CC-CGCCCGGGgCGGC- -5'
30994 5' -69.2 NC_006560.1 + 33485 0.66 0.3716
Target:  5'- gCGGggggCCgCCGGCagggaGGCGGGCgCCgGCCc -3'
miRNA:   3'- -GCCa---GG-GGCUGc----CCGCCCG-GGgCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.