miRNA display CGI


Results 41 - 60 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 3' -66.9 NC_006560.1 + 43503 0.66 0.399485
Target:  5'- -cGC-CCCCGcGCCCCCCAgCCgCa- -3'
miRNA:   3'- uaUGuGGGGCcCGGGGGGUgGGgGag -5'
30995 3' -66.9 NC_006560.1 + 150066 0.66 0.399485
Target:  5'- -cGCGCCCCGcGCCCggCCgCGCCCgCCg- -3'
miRNA:   3'- uaUGUGGGGCcCGGG--GG-GUGGG-GGag -5'
30995 3' -66.9 NC_006560.1 + 143298 0.66 0.399485
Target:  5'- ----cCCaCCGGccGCCgCCCCACCCCCc- -3'
miRNA:   3'- uauguGG-GGCC--CGG-GGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 113465 0.66 0.399485
Target:  5'- -gGCGCCCgacgCGGGCgCCaacaCCGCCUCCa- -3'
miRNA:   3'- uaUGUGGG----GCCCG-GGg---GGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 80212 0.66 0.399485
Target:  5'- ---aGCCCCc-GCCCCauCCACCUCCUCc -3'
miRNA:   3'- uaugUGGGGccCGGGG--GGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 55979 0.66 0.399485
Target:  5'- -gGgGCCCCGGGUCCagagguaCgACCCCUg- -3'
miRNA:   3'- uaUgUGGGGCCCGGGg------GgUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 52804 0.66 0.399485
Target:  5'- cAUGCGCCCCGacgaCCCCUGCCgCCC-Ca -3'
miRNA:   3'- -UAUGUGGGGCccg-GGGGGUGG-GGGaG- -5'
30995 3' -66.9 NC_006560.1 + 104742 0.66 0.398684
Target:  5'- -cGCGCgaauucgCCCGGGagauggCCCCCGCCCCg-- -3'
miRNA:   3'- uaUGUG-------GGGCCCg-----GGGGGUGGGGgag -5'
30995 3' -66.9 NC_006560.1 + 26445 0.66 0.391521
Target:  5'- -gGCugC-CGGGCUCCCCuagGCCUCCa- -3'
miRNA:   3'- uaUGugGgGCCCGGGGGG---UGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 141296 0.66 0.391521
Target:  5'- --cCAUCCCccucCCCCCCuCCCCCUCc -3'
miRNA:   3'- uauGUGGGGccc-GGGGGGuGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 141339 0.66 0.391521
Target:  5'- --cCAUCCCccucCCCCCCuCCCCCUCc -3'
miRNA:   3'- uauGUGGGGccc-GGGGGGuGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 143926 0.66 0.391521
Target:  5'- -cGCGCCCCacGGCCCcgcgaggcgaCCCGCgagcgugucuuCCCCUCu -3'
miRNA:   3'- uaUGUGGGGc-CCGGG----------GGGUG-----------GGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 24967 0.66 0.391521
Target:  5'- -cGCGCCUgGGGCCCgaCACCgCCg- -3'
miRNA:   3'- uaUGUGGGgCCCGGGggGUGGgGGag -5'
30995 3' -66.9 NC_006560.1 + 79509 0.66 0.391521
Target:  5'- -cGCGCCgCCcGGCCCaCCgucgGCUCCCUCg -3'
miRNA:   3'- uaUGUGG-GGcCCGGG-GGg---UGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 84180 0.66 0.391521
Target:  5'- -cGCGCUCCGGGCCCUgauCUACgCgUUCa -3'
miRNA:   3'- uaUGUGGGGCCCGGGG---GGUGgGgGAG- -5'
30995 3' -66.9 NC_006560.1 + 102408 0.66 0.391521
Target:  5'- -gGCgGCCUCGGGCgCggccgcggcgUCCGCCUCCUCg -3'
miRNA:   3'- uaUG-UGGGGCCCGgG----------GGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 30706 0.66 0.390731
Target:  5'- ---gGCCCCGcGGCCgcgagccgccaugCCCCGCCCaCC-Cg -3'
miRNA:   3'- uaugUGGGGC-CCGG-------------GGGGUGGG-GGaG- -5'
30995 3' -66.9 NC_006560.1 + 15972 0.66 0.390731
Target:  5'- -cGCACgugCCCGGagagggcGCCgCCCCGCCCCgaCa -3'
miRNA:   3'- uaUGUG---GGGCC-------CGG-GGGGUGGGGgaG- -5'
30995 3' -66.9 NC_006560.1 + 121889 0.66 0.389153
Target:  5'- -gGCGUCCCGGcgcgccgcccucccGUCCCCCGCgCCCCg- -3'
miRNA:   3'- uaUGUGGGGCC--------------CGGGGGGUG-GGGGag -5'
30995 3' -66.9 NC_006560.1 + 143193 0.66 0.383662
Target:  5'- -cGCGCCCCGugccGGCCUCCggagccgcgACCCCCg- -3'
miRNA:   3'- uaUGUGGGGC----CCGGGGGg--------UGGGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.