miRNA display CGI


Results 21 - 40 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 3' -66.9 NC_006560.1 + 149263 0.66 0.415719
Target:  5'- -gGCuuCCgCCGGGCgCCU--CCCCCUCg -3'
miRNA:   3'- uaUGu-GG-GGCCCGgGGGguGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 98808 0.66 0.408364
Target:  5'- --cCGCCCgggggggaucugguaGGGCagaccccaUCCCACCCCCUCc -3'
miRNA:   3'- uauGUGGGg--------------CCCGg-------GGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 138683 0.66 0.407552
Target:  5'- -cACACCCCccccUCCCCCGCCCCg-- -3'
miRNA:   3'- uaUGUGGGGccc-GGGGGGUGGGGgag -5'
30995 3' -66.9 NC_006560.1 + 20832 0.66 0.407552
Target:  5'- -aGC-CCCCGu-CCCCCCgaGCCCCCg- -3'
miRNA:   3'- uaUGuGGGGCccGGGGGG--UGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 31300 0.66 0.407552
Target:  5'- --cCGCCuCCGcccGCCgCUCCGCCCCCUg -3'
miRNA:   3'- uauGUGG-GGCc--CGG-GGGGUGGGGGAg -5'
30995 3' -66.9 NC_006560.1 + 67681 0.66 0.407552
Target:  5'- ---aAUCUCGGGCCgCCgcgCCGCCCCC-Cg -3'
miRNA:   3'- uaugUGGGGCCCGG-GG---GGUGGGGGaG- -5'
30995 3' -66.9 NC_006560.1 + 67789 0.66 0.407552
Target:  5'- ---aAUCUCGGGCCgCCgcgCCGCCCCC-Cg -3'
miRNA:   3'- uaugUGGGGCCCGG-GG---GGUGGGGGaG- -5'
30995 3' -66.9 NC_006560.1 + 70171 0.66 0.407552
Target:  5'- uGUACGCCCUGgcGGCCCggggcgugCUCGCCgaCCUCg -3'
miRNA:   3'- -UAUGUGGGGC--CCGGG--------GGGUGGg-GGAG- -5'
30995 3' -66.9 NC_006560.1 + 134467 0.66 0.407552
Target:  5'- -gGCcCCCgCGGGCCCgCgGuCCCCgUCg -3'
miRNA:   3'- uaUGuGGG-GCCCGGGgGgU-GGGGgAG- -5'
30995 3' -66.9 NC_006560.1 + 150305 0.66 0.407552
Target:  5'- -cGCGCCgCCGcgggagggcccGGCCCCCCGCgCCg-- -3'
miRNA:   3'- uaUGUGG-GGC-----------CCGGGGGGUGgGGgag -5'
30995 3' -66.9 NC_006560.1 + 120120 0.66 0.40593
Target:  5'- cUGCGCCCUGGGCCCCggggcgugguggCACUuuCCCa- -3'
miRNA:   3'- uAUGUGGGGCCCGGGGg-----------GUGG--GGGag -5'
30995 3' -66.9 NC_006560.1 + 145847 0.66 0.402699
Target:  5'- -gGCGCCCCccucGGcCCCCCCGCgcgucgcgcggcgagCCCCa- -3'
miRNA:   3'- uaUGUGGGGc---CC-GGGGGGUG---------------GGGGag -5'
30995 3' -66.9 NC_006560.1 + 28551 0.66 0.399485
Target:  5'- --cCGCCCCuggGGGCCgCCCCGCgCCg-- -3'
miRNA:   3'- uauGUGGGG---CCCGG-GGGGUGgGGgag -5'
30995 3' -66.9 NC_006560.1 + 43503 0.66 0.399485
Target:  5'- -cGC-CCCCGcGCCCCCCAgCCgCa- -3'
miRNA:   3'- uaUGuGGGGCcCGGGGGGUgGGgGag -5'
30995 3' -66.9 NC_006560.1 + 52804 0.66 0.399485
Target:  5'- cAUGCGCCCCGacgaCCCCUGCCgCCC-Ca -3'
miRNA:   3'- -UAUGUGGGGCccg-GGGGGUGG-GGGaG- -5'
30995 3' -66.9 NC_006560.1 + 55979 0.66 0.399485
Target:  5'- -gGgGCCCCGGGUCCagagguaCgACCCCUg- -3'
miRNA:   3'- uaUgUGGGGCCCGGGg------GgUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 80212 0.66 0.399485
Target:  5'- ---aGCCCCc-GCCCCauCCACCUCCUCc -3'
miRNA:   3'- uaugUGGGGccCGGGG--GGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 113465 0.66 0.399485
Target:  5'- -gGCGCCCgacgCGGGCgCCaacaCCGCCUCCa- -3'
miRNA:   3'- uaUGUGGG----GCCCG-GGg---GGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 143298 0.66 0.399485
Target:  5'- ----cCCaCCGGccGCCgCCCCACCCCCc- -3'
miRNA:   3'- uauguGG-GGCC--CGG-GGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 132021 0.66 0.399485
Target:  5'- ---gACCCCGGagacacGCCCCCgGCCgCCg- -3'
miRNA:   3'- uaugUGGGGCC------CGGGGGgUGGgGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.