miRNA display CGI


Results 21 - 40 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 3' -66.9 NC_006560.1 + 144831 0.76 0.078389
Target:  5'- -gGCcuCCCCGGGCCCU--GCCCCCUCu -3'
miRNA:   3'- uaUGu-GGGGCCCGGGGggUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 105601 0.76 0.078389
Target:  5'- --cCGCCCCGGaggccGCCCCCCGgCCCCCg- -3'
miRNA:   3'- uauGUGGGGCC-----CGGGGGGU-GGGGGag -5'
30995 3' -66.9 NC_006560.1 + 28906 0.76 0.08018
Target:  5'- aAUGCucuCCUCGgggggccGGCCCgCCCGCCCCCUCa -3'
miRNA:   3'- -UAUGu--GGGGC-------CCGGG-GGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 28491 0.76 0.080382
Target:  5'- --cCGCCCCGGGCCg--CGCCCCCUCg -3'
miRNA:   3'- uauGUGGGGCCCGGgggGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 855 0.76 0.082423
Target:  5'- -cGCGCgCCCGcccacGG-CCCCCGCCCCCUCg -3'
miRNA:   3'- uaUGUG-GGGC-----CCgGGGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 112408 0.76 0.082423
Target:  5'- -gGC-CCCCGGGCCCCCC-CCgCCg- -3'
miRNA:   3'- uaUGuGGGGCCCGGGGGGuGGgGGag -5'
30995 3' -66.9 NC_006560.1 + 30491 0.76 0.082423
Target:  5'- -gGCGCCCCGGcCCCCCgCGCCUCCg- -3'
miRNA:   3'- uaUGUGGGGCCcGGGGG-GUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 86797 0.76 0.090414
Target:  5'- -gGCGCCCUGGuaccccacgugccgGCCCCCC-UCCCCUCu -3'
miRNA:   3'- uaUGUGGGGCC--------------CGGGGGGuGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 7165 0.75 0.093393
Target:  5'- -cGCGCCCCccuCCCCCCGCCCCCg- -3'
miRNA:   3'- uaUGUGGGGcccGGGGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 105723 0.75 0.093393
Target:  5'- -aGCACCUggcugauggcggCGGGCCUCCUgcggACCCCCUCg -3'
miRNA:   3'- uaUGUGGG------------GCCCGGGGGG----UGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 142421 0.75 0.093393
Target:  5'- -cGgACCCCGGGCCCCgCCGCCCg--- -3'
miRNA:   3'- uaUgUGGGGCCCGGGG-GGUGGGggag -5'
30995 3' -66.9 NC_006560.1 + 147154 0.75 0.096704
Target:  5'- -gGCGCCgCCucgGGGCgccucccucccucucCCCCCGCCCCCUCc -3'
miRNA:   3'- uaUGUGG-GG---CCCG---------------GGGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 29754 0.75 0.097428
Target:  5'- cUGCGagCCCGGGCCCgCCUcccgggggccgcggGCCCCCUCu -3'
miRNA:   3'- uAUGUg-GGGCCCGGG-GGG--------------UGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 144436 0.75 0.098157
Target:  5'- --cCGCCCa-GGCCCCCgACCCCCUUc -3'
miRNA:   3'- uauGUGGGgcCCGGGGGgUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 22825 0.75 0.100624
Target:  5'- ---gGCCCgGGGCcgagCCCCCGCCCCCg- -3'
miRNA:   3'- uaugUGGGgCCCG----GGGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 144222 0.75 0.10315
Target:  5'- --cCugCCgGcGGCCCCCCGCCgCCUCu -3'
miRNA:   3'- uauGugGGgC-CCGGGGGGUGGgGGAG- -5'
30995 3' -66.9 NC_006560.1 + 72928 0.75 0.105736
Target:  5'- -gGC-CCCCGGaGCCCCCCGCCUgCg- -3'
miRNA:   3'- uaUGuGGGGCC-CGGGGGGUGGGgGag -5'
30995 3' -66.9 NC_006560.1 + 145232 0.75 0.108382
Target:  5'- -gGCGCCCCGGgggagcccgcaGCCCCCgGCCCCgUg -3'
miRNA:   3'- uaUGUGGGGCC-----------CGGGGGgUGGGGgAg -5'
30995 3' -66.9 NC_006560.1 + 13933 0.75 0.108382
Target:  5'- -cGCACCCCGcaGGCCCgCCauaGCCCCCa- -3'
miRNA:   3'- uaUGUGGGGC--CCGGG-GGg--UGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 38231 0.75 0.108382
Target:  5'- --cCGCCgCCGGGCccuuccaccucCCCCCACCCCC-Cg -3'
miRNA:   3'- uauGUGG-GGCCCG-----------GGGGGUGGGGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.