miRNA display CGI


Results 1 - 20 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 3' -66.9 NC_006560.1 + 141687 1.05 0.000522
Target:  5'- aAUACACCCCGGGCCCCCCACCCCCUCc -3'
miRNA:   3'- -UAUGUGGGGCCCGGGGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 39675 0.91 0.006098
Target:  5'- -cGCGCCCCGGGCCgCCCCGCCgCCCUCu -3'
miRNA:   3'- uaUGUGGGGCCCGG-GGGGUGG-GGGAG- -5'
30995 3' -66.9 NC_006560.1 + 144911 0.86 0.015572
Target:  5'- -cGCGCCCCcGGCCCCCCccuCCCCCUCg -3'
miRNA:   3'- uaUGUGGGGcCCGGGGGGu--GGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 15142 0.84 0.021814
Target:  5'- -cGgGCUCUGGGCCCCCCGCCCCCg- -3'
miRNA:   3'- uaUgUGGGGCCCGGGGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 144069 0.83 0.024192
Target:  5'- -cGC-CCCCGGcGCCCCCCGCCCCCc- -3'
miRNA:   3'- uaUGuGGGGCC-CGGGGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 42798 0.82 0.032971
Target:  5'- -cGCACCCCGGugccGCCCCCgCGCCCCCg- -3'
miRNA:   3'- uaUGUGGGGCC----CGGGGG-GUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 56080 0.81 0.03383
Target:  5'- gGUGCGCCCCGGGg--CCCGCCCCCUCc -3'
miRNA:   3'- -UAUGUGGGGCCCgggGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 73718 0.81 0.038865
Target:  5'- -gGCGCCCgGGGggaccgaggacccgcCCCCCCACCCCCUg -3'
miRNA:   3'- uaUGUGGGgCCC---------------GGGGGGUGGGGGAg -5'
30995 3' -66.9 NC_006560.1 + 79356 0.81 0.039468
Target:  5'- --cCGCCCCccccGGCCCCCCGCCCCCa- -3'
miRNA:   3'- uauGUGGGGc---CCGGGGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 543 0.8 0.042513
Target:  5'- -cGCGCCCCGGGUCCCCggcgucccccgcgCGCCCCgUCg -3'
miRNA:   3'- uaUGUGGGGCCCGGGGG-------------GUGGGGgAG- -5'
30995 3' -66.9 NC_006560.1 + 97415 0.8 0.04486
Target:  5'- --cCACCCCGGGCCCCUCcguggACCCCCcCa -3'
miRNA:   3'- uauGUGGGGCCCGGGGGG-----UGGGGGaG- -5'
30995 3' -66.9 NC_006560.1 + 36731 0.8 0.046022
Target:  5'- uUGCcucuCCCCGgcGGCCCCCCACCUCCUUa -3'
miRNA:   3'- uAUGu---GGGGC--CCGGGGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 78286 0.79 0.049686
Target:  5'- -gACGCCCCGGccccGCCCgCCCACgCCCUCu -3'
miRNA:   3'- uaUGUGGGGCC----CGGG-GGGUGgGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 79964 0.79 0.053634
Target:  5'- ---aGCCCCGaGcGCCCCCCGCCCCC-Cg -3'
miRNA:   3'- uaugUGGGGC-C-CGGGGGGUGGGGGaG- -5'
30995 3' -66.9 NC_006560.1 + 72743 0.77 0.06739
Target:  5'- --cCGCCCC-GGCCCCCCuccccacggcggACCCCCUCc -3'
miRNA:   3'- uauGUGGGGcCCGGGGGG------------UGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 144963 0.77 0.07088
Target:  5'- -gGCGCgCCGGGCCCCgCC-CCCCCg- -3'
miRNA:   3'- uaUGUGgGGCCCGGGG-GGuGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 76552 0.77 0.07269
Target:  5'- -cGCGCgaCGGcGCCCCCgACCCCCUCg -3'
miRNA:   3'- uaUGUGggGCC-CGGGGGgUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 145272 0.77 0.074544
Target:  5'- ---aGCCCC-GGCCCCCCgGCCCCCUg -3'
miRNA:   3'- uaugUGGGGcCCGGGGGG-UGGGGGAg -5'
30995 3' -66.9 NC_006560.1 + 143489 0.77 0.074544
Target:  5'- -gGCG-CCCGGcGUCCCCCGCCCCCg- -3'
miRNA:   3'- uaUGUgGGGCC-CGGGGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 144251 0.76 0.078192
Target:  5'- --cCugCCCGGGCCCgCCCGcgugcgcggggacCCCCCUCc -3'
miRNA:   3'- uauGugGGGCCCGGG-GGGU-------------GGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.