miRNA display CGI


Results 1 - 20 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 3' -66.9 NC_006560.1 + 92 0.72 0.176035
Target:  5'- -cGCGCCCC--GCgCCCCGCCCCCg- -3'
miRNA:   3'- uaUGUGGGGccCGgGGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 150 0.68 0.310998
Target:  5'- --cCGCCCCGcGGUCccggCCCCGCCCCg-- -3'
miRNA:   3'- uauGUGGGGC-CCGG----GGGGUGGGGgag -5'
30995 3' -66.9 NC_006560.1 + 326 0.73 0.135141
Target:  5'- -aAgGCCCC-GGCCCCCUcucGCCCCuCUCg -3'
miRNA:   3'- uaUgUGGGGcCCGGGGGG---UGGGG-GAG- -5'
30995 3' -66.9 NC_006560.1 + 397 0.67 0.331648
Target:  5'- cGUGCGCCCgcccCCCCCCGCCCCg-- -3'
miRNA:   3'- -UAUGUGGGgcccGGGGGGUGGGGgag -5'
30995 3' -66.9 NC_006560.1 + 543 0.8 0.042513
Target:  5'- -cGCGCCCCGGGUCCCCggcgucccccgcgCGCCCCgUCg -3'
miRNA:   3'- uaUGUGGGGCCCGGGGG-------------GUGGGGgAG- -5'
30995 3' -66.9 NC_006560.1 + 715 0.68 0.324654
Target:  5'- -cGCgGCCCCGucCCCCCCgcgGCCCCgUCc -3'
miRNA:   3'- uaUG-UGGGGCccGGGGGG---UGGGGgAG- -5'
30995 3' -66.9 NC_006560.1 + 750 0.66 0.375908
Target:  5'- -cGCgGCCCCGu-CCCCCC-CCCCCg- -3'
miRNA:   3'- uaUG-UGGGGCccGGGGGGuGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 855 0.76 0.082423
Target:  5'- -cGCGCgCCCGcccacGG-CCCCCGCCCCCUCg -3'
miRNA:   3'- uaUGUG-GGGC-----CCgGGGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 975 0.72 0.171904
Target:  5'- cUGCACgCCCGGgggcgcGCCCCUCGCCCCg-- -3'
miRNA:   3'- uAUGUG-GGGCC------CGGGGGGUGGGGgag -5'
30995 3' -66.9 NC_006560.1 + 1101 0.66 0.415719
Target:  5'- -gGCuCCCCGGcggcgcgaGCCCCgCGacgcgcCCCCCUCc -3'
miRNA:   3'- uaUGuGGGGCC--------CGGGGgGU------GGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 1203 0.66 0.375908
Target:  5'- -cGgACCCCaGGCUCCCCgggggcgggGCCCCUg- -3'
miRNA:   3'- uaUgUGGGGcCCGGGGGG---------UGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 1237 0.74 0.114989
Target:  5'- -cGCGCCCCcacgcagccccggcgGGGCCCCCgcgaaGCCCCCg- -3'
miRNA:   3'- uaUGUGGGG---------------CCCGGGGGg----UGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 1353 0.7 0.232321
Target:  5'- cGUGCGCg-CGGGUCCCCCGCggcccgcacggcgCCCCUCc -3'
miRNA:   3'- -UAUGUGggGCCCGGGGGGUG-------------GGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 1421 0.73 0.135141
Target:  5'- -cGCcCCCCGcGGCCCUCgC-CCCCCUCc -3'
miRNA:   3'- uaUGuGGGGC-CCGGGGG-GuGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 1536 0.68 0.290703
Target:  5'- -cGCGCgCCCGGccacgccGUCCCCUcUCCCCUCu -3'
miRNA:   3'- uaUGUG-GGGCC-------CGGGGGGuGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 1634 0.69 0.264882
Target:  5'- -cGCGCCugucuguggcggggCCGGGgcgucUCCCCCucuCCCCCUCu -3'
miRNA:   3'- uaUGUGG--------------GGCCC-----GGGGGGu--GGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 4483 0.66 0.399485
Target:  5'- --cCACCUCGGGCgcgCCCCagaGCCCCg-- -3'
miRNA:   3'- uauGUGGGGCCCG---GGGGg--UGGGGgag -5'
30995 3' -66.9 NC_006560.1 + 6069 0.66 0.399485
Target:  5'- -aGCAUCgCCGcGCCCgCUCGCgCCCUCg -3'
miRNA:   3'- uaUGUGG-GGCcCGGG-GGGUGgGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 6332 0.72 0.156231
Target:  5'- -gACGCCgCgCGGGCgCCCCGCCCCg-- -3'
miRNA:   3'- uaUGUGG-G-GCCCGgGGGGUGGGGgag -5'
30995 3' -66.9 NC_006560.1 + 6359 0.68 0.290703
Target:  5'- --cCGCCCuucggggCGGGCCCgCCGCCCCg-- -3'
miRNA:   3'- uauGUGGG-------GCCCGGGgGGUGGGGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.