miRNA display CGI


Results 1 - 20 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 3' -66.9 NC_006560.1 + 150479 0.68 0.310998
Target:  5'- --cCGCCCCGcGGUCccggCCCCGCCCCg-- -3'
miRNA:   3'- uauGUGGGGC-CCGG----GGGGUGGGGgag -5'
30995 3' -66.9 NC_006560.1 + 150421 0.72 0.176035
Target:  5'- -cGCGCCCC--GCgCCCCGCCCCCg- -3'
miRNA:   3'- uaUGUGGGGccCGgGGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 150305 0.66 0.407552
Target:  5'- -cGCGCCgCCGcgggagggcccGGCCCCCCGCgCCg-- -3'
miRNA:   3'- uaUGUGG-GGC-----------CCGGGGGGUGgGGgag -5'
30995 3' -66.9 NC_006560.1 + 150066 0.66 0.399485
Target:  5'- -cGCGCCCCGcGCCCggCCgCGCCCgCCg- -3'
miRNA:   3'- uaUGUGGGGCcCGGG--GG-GUGGG-GGag -5'
30995 3' -66.9 NC_006560.1 + 149860 0.69 0.254971
Target:  5'- -gAgACCCCcGGCaCCCCCggcACCCCCg- -3'
miRNA:   3'- uaUgUGGGGcCCG-GGGGG---UGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 149488 0.69 0.27267
Target:  5'- -gGCGgCCCGGGCCgacgcuCCCCGCCCgggCCg- -3'
miRNA:   3'- uaUGUgGGGCCCGG------GGGGUGGG---GGag -5'
30995 3' -66.9 NC_006560.1 + 149263 0.66 0.415719
Target:  5'- -gGCuuCCgCCGGGCgCCU--CCCCCUCg -3'
miRNA:   3'- uaUGu-GG-GGCCCGgGGGguGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 148294 0.66 0.375908
Target:  5'- cGUAgACCCCcaGGaCCCCCaggACCCCCa- -3'
miRNA:   3'- -UAUgUGGGGc-CC-GGGGGg--UGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 148221 0.73 0.135141
Target:  5'- -cGCGCCCCuu-CCCCCCucccuCCCCCUCg -3'
miRNA:   3'- uaUGUGGGGcccGGGGGGu----GGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 147449 0.68 0.285008
Target:  5'- ----cUCCCGcGGCCUCCCGCCaCCCa- -3'
miRNA:   3'- uauguGGGGC-CCGGGGGGUGG-GGGag -5'
30995 3' -66.9 NC_006560.1 + 147418 0.66 0.383662
Target:  5'- -aACACCCU---CCCCaCCACuCCCCUCc -3'
miRNA:   3'- uaUGUGGGGcccGGGG-GGUG-GGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 147154 0.75 0.096704
Target:  5'- -gGCGCCgCCucgGGGCgccucccucccucucCCCCCGCCCCCUCc -3'
miRNA:   3'- uaUGUGG-GG---CCCG---------------GGGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 145847 0.66 0.402699
Target:  5'- -gGCGCCCCccucGGcCCCCCCGCgcgucgcgcggcgagCCCCa- -3'
miRNA:   3'- uaUGUGGGGc---CC-GGGGGGUG---------------GGGGag -5'
30995 3' -66.9 NC_006560.1 + 145752 0.66 0.423987
Target:  5'- -cGCGCCCCc-GCCCggCCGCCCCC-Cg -3'
miRNA:   3'- uaUGUGGGGccCGGGg-GGUGGGGGaG- -5'
30995 3' -66.9 NC_006560.1 + 145635 0.69 0.254971
Target:  5'- --cCGCCCUGcGG-CCCCUGCCCCCa- -3'
miRNA:   3'- uauGUGGGGC-CCgGGGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 145583 0.72 0.160024
Target:  5'- ---gGCCCCGGGCCCCgcucgCugCCCCg- -3'
miRNA:   3'- uaugUGGGGCCCGGGGg----GugGGGGag -5'
30995 3' -66.9 NC_006560.1 + 145356 0.7 0.222411
Target:  5'- -gGgGCCCUcuGCCCCCCgGCCCCCUg -3'
miRNA:   3'- uaUgUGGGGccCGGGGGG-UGGGGGAg -5'
30995 3' -66.9 NC_006560.1 + 145317 0.73 0.138464
Target:  5'- --cCGCCCCcgcgggGGGCCCUCUGCCCCC-Cg -3'
miRNA:   3'- uauGUGGGG------CCCGGGGGGUGGGGGaG- -5'
30995 3' -66.9 NC_006560.1 + 145272 0.77 0.074544
Target:  5'- ---aGCCCC-GGCCCCCCgGCCCCCUg -3'
miRNA:   3'- uaugUGGGGcCCGGGGGG-UGGGGGAg -5'
30995 3' -66.9 NC_006560.1 + 145232 0.75 0.108382
Target:  5'- -gGCGCCCCGGgggagcccgcaGCCCCCgGCCCCgUg -3'
miRNA:   3'- uaUGUGGGGCC-----------CGGGGGgUGGGGgAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.