miRNA display CGI


Results 21 - 40 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 3' -66.9 NC_006560.1 + 6846 0.72 0.171904
Target:  5'- --uCACCUCGGccucuGCCCgCCCGCgCCCCUCc -3'
miRNA:   3'- uauGUGGGGCC-----CGGG-GGGUG-GGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 7075 0.71 0.198043
Target:  5'- -cGCACCUCGcGGCCCgcgagaCCgCGCCUCCUCc -3'
miRNA:   3'- uaUGUGGGGC-CCGGG------GG-GUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 7165 0.75 0.093393
Target:  5'- -cGCGCCCCccuCCCCCCGCCCCCg- -3'
miRNA:   3'- uaUGUGGGGcccGGGGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 7358 0.68 0.285008
Target:  5'- -cGCGCCCCucGCgagCCCCgACCCCUUCg -3'
miRNA:   3'- uaUGUGGGGccCG---GGGGgUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 7416 0.68 0.310998
Target:  5'- ---gGCCCCGGGaCCCCaggCAgCCCCg- -3'
miRNA:   3'- uaugUGGGGCCC-GGGGg--GUgGGGGag -5'
30995 3' -66.9 NC_006560.1 + 7679 0.71 0.199903
Target:  5'- -cGCGCCCCGagaccacgcgaccgcGGCgCUCUAUCCCCUCu -3'
miRNA:   3'- uaUGUGGGGC---------------CCGgGGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 8260 0.72 0.15252
Target:  5'- cGUGCGCCCCGuGCCCUCCcCCgCCCa- -3'
miRNA:   3'- -UAUGUGGGGCcCGGGGGGuGG-GGGag -5'
30995 3' -66.9 NC_006560.1 + 10260 0.74 0.113862
Target:  5'- -gGCgGCCCCGGccucGgCUCCCGCCCCCUCc -3'
miRNA:   3'- uaUG-UGGGGCC----CgGGGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 12163 0.67 0.353288
Target:  5'- -aACucCCCCGGGaCCUCCAgguCCCCCa- -3'
miRNA:   3'- uaUGu-GGGGCCCgGGGGGU---GGGGGag -5'
30995 3' -66.9 NC_006560.1 + 13933 0.75 0.108382
Target:  5'- -cGCACCCCGcaGGCCCgCCauaGCCCCCa- -3'
miRNA:   3'- uaUGUGGGGC--CCGGG-GGg--UGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 14942 0.72 0.160024
Target:  5'- -cGCcguCCCC-GGCCCCCU-CCCCCUCc -3'
miRNA:   3'- uaUGu--GGGGcCCGGGGGGuGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 15142 0.84 0.021814
Target:  5'- -cGgGCUCUGGGCCCCCCGCCCCCg- -3'
miRNA:   3'- uaUgUGGGGCCCGGGGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 15362 0.69 0.27267
Target:  5'- -cGCGgUgaggCCGGGacucCCCCCCGCCUCCUCc -3'
miRNA:   3'- uaUGUgG----GGCCC----GGGGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 15497 0.7 0.212371
Target:  5'- -cGCGCUCgGGGCCCC--GCCCCCg- -3'
miRNA:   3'- uaUGUGGGgCCCGGGGggUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 15972 0.66 0.390731
Target:  5'- -cGCACgugCCCGGagagggcGCCgCCCCGCCCCgaCa -3'
miRNA:   3'- uaUGUG---GGGCC-------CGG-GGGGUGGGGgaG- -5'
30995 3' -66.9 NC_006560.1 + 17524 0.68 0.297783
Target:  5'- -gGCGCCgCCGucgucGUCgUCCGCCCCCUCg -3'
miRNA:   3'- uaUGUGG-GGCc----CGGgGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 17971 0.67 0.36072
Target:  5'- -gGCGCCCgGGGCCCC--ACCCgCg- -3'
miRNA:   3'- uaUGUGGGgCCCGGGGggUGGGgGag -5'
30995 3' -66.9 NC_006560.1 + 19067 0.71 0.202723
Target:  5'- -cACACgacuCCCGcGGUgugacaUCCCCGCCCCCUCc -3'
miRNA:   3'- uaUGUG----GGGC-CCG------GGGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 19753 0.7 0.212371
Target:  5'- -gGCAggaucuCCCCGGcGUCCCCCGCCCgCa- -3'
miRNA:   3'- uaUGU------GGGGCC-CGGGGGGUGGGgGag -5'
30995 3' -66.9 NC_006560.1 + 20720 0.71 0.207498
Target:  5'- -aGC-CCCCGaGCCCCCgaGCCCCCg- -3'
miRNA:   3'- uaUGuGGGGCcCGGGGGg-UGGGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.